Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I21
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    30   1.5  
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    28   8.1  

>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 268 LTLCLYVLISVFITCIYKVHSYVIMYF*YKPTSSFIDGSYC*CIFSITVLL 420
           L L LY++IS  +  ++++   V++     PT+S    + C CI  + V++
Sbjct: 409 LALVLYIVISALLQSLFEIIEVVLLNLPSSPTASRARHARCICIALLLVVI 459


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 497 KVHIVNGSFGMI*IINKFYSFLFRSSIKSKKFTSSHKNKVVEV 625
           KV I+N +FG     + FYS  F   + S + ++S K KVV+V
Sbjct: 26  KVSILNNNFGSR---STFYSLQFLYYVFSHRMSASQKQKVVKV 65


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 280 LYVLISVFITCIYKVHSYVIMYF*YKPTSSFIDGS 384
           L  LI+V ITC+  V SYVIM+   +  S+ I  S
Sbjct: 178 LMALITVAITCLICVASYVIMWITLRKHSAGITKS 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,586,315
Number of Sequences: 27780
Number of extensions: 274851
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)