Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I20
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    28   1.8  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   4.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.4  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 426 VCIFMFIQRNYSISGKVLIIVIISSIDCARLRKFFLI--NLTS*LWWFFTSSQFQIIKFN 599
           +C  +   R + I   + I+ + +  DC +L   +LI  NL     W  + ++ QI K +
Sbjct: 273 ICDSVLFSRIHDIRASIRIVCVTALYDCCQLLPTYLINRNLIRHSGWGLSDAESQIRKIS 332

Query: 600 TISILALCMH 629
              I  L  H
Sbjct: 333 LKIIDYLSSH 342


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 428 LYFYVYSEELFYFWKGFNHSNNKFDRLCTITKVFFNKFN*LTVV---VFH*FSISNNQIQ 598
           LY Y +  ELF+     N +N + D  CT  ++ F K   L+ +    FH   ++N +  
Sbjct: 119 LYKYTHPSELFWQRLSDNMANIEDDGTCTEAQLAFRKRAALSKLGHPAFHFLPMNNKE-- 176

Query: 599 HNFHFS 616
            +FH++
Sbjct: 177 -SFHYA 181


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 437 YVYSEELFYFWKGFNHSNN 493
           Y Y + + + WKG NHS++
Sbjct: 622 YSYVKRVEHLWKGINHSDS 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,305
Number of Sequences: 5004
Number of extensions: 58033
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)