Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I19
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    27   2.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 670 HHQTNNSQQSFHDGVLTLQLMVYKYILHTHFTIISLC 780
           HH   + +Q+FHDG++  + + + + +       SLC
Sbjct: 136 HHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLC 172


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 706 DGVLTLQLMVYKYILHTHFTIISLCELT 789
           D +L LQL + K+++ T   I S  ELT
Sbjct: 489 DELLNLQLKIRKFLMFTFHIIRSFSELT 516


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 679 TNNSQQSFHDGVLTLQLMVYKYILHTHFTIISLC 780
           ++N ++SF + +     ++Y+     H T ISLC
Sbjct: 90  SSNERESFENLIFEHACLIYRLACTYHTTAISLC 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,478
Number of Sequences: 5004
Number of extensions: 52929
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)