Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I17
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    74   2e-14
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   1.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.3  
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    25   9.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = -1

Query: 658 QLXNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 479
           +L  LYA FKQATVGD +   +PGLLDLKGK K++AW +L G SKEDA   YI  V+ L 
Sbjct: 23  ELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDELK 81

Query: 478 ASIGLK 461
              G+K
Sbjct: 82  TKYGMK 87


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 264 LTLMNGTSRVLKHNIEEQ*NNLRPFRNHVLKVYYVLGRSVLYLFWLRIFIYI*VDITLV* 85
           L    GT  +L+HN+ +      P + H  K+     R  +  F  R FI+   D T   
Sbjct: 253 LCQQTGTFYLLQHNLLQNFEFENPIKLHFDKIIPYFSRLTVLTFSNRAFIF--PDHTFPR 310

Query: 84  VQFFSRD-QNHARLFFFVC 31
           +Q  + D   H + FF +C
Sbjct: 311 LQQSAEDFLYHLQFFFTLC 329


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 219  EEQ*NNLRPFRNHVLKVYYVLGRSVLYLFWLRIF 118
            +EQ N+ +PF+++++++Y +      Y FW + F
Sbjct: 4026 DEQGNSRKPFKDYIIQLYSL---KYDYDFWFKYF 4056


>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 520 PPSKCRPVCAKRQIWLYPSSLEDQVYWLDRH 612
           PP     +     +W Y  S  D +Y L++H
Sbjct: 85  PPGTRESLLQSAVVWEYQKSRNDNLYLLEKH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,808
Number of Sequences: 5004
Number of extensions: 44731
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)