Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I17
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    55   6e-08
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    53   2e-07
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    52   4e-07
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    48   5e-06

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = -1

Query: 646 LYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 479
           LY  +KQATVGD + A RPG+   + +AK+DAW  + G SKE+A   YI  V+ L+
Sbjct: 29  LYGLYKQATVGDVNTA-RPGIFAQRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = -1

Query: 646 LYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 482
           LY  +KQATVGD +  +RPG+   + +AK+DAW  + G SKE+A   YI  V+ L
Sbjct: 29  LYGLYKQATVGDVN-TSRPGIFAQRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/56 (46%), Positives = 35/56 (62%)
 Frame = -1

Query: 646 LYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 479
           LY  +KQATVG      RPG+ +LK + K+DAW  + G SKE+A   YI  V+ L+
Sbjct: 29  LYGLYKQATVGPVT-TGRPGIFNLKDRYKWDAWKAVEGKSKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = -1

Query: 661 AQLXNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 482
           AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E+A + YI +V+ L
Sbjct: 115 AQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDEL 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,815
Number of Sequences: 37544
Number of extensions: 256492
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)