Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I14
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.21 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    27   1.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.4  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 280 FRGLASFTGISNKFVFTLTAEQCSDNLYAGTNVSLSREKRPFACKRRACSVRPT 441
           F  L S TG S   + +   +  S+   AG++ S+SR+K PF+   RA S + T
Sbjct: 87  FPTLLSKTGPSKPRIVSWVRKTASNTSVAGSD-SVSRDKIPFSASSRASSTKST 139


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 601 NHVLFIVSYIIMAGIGVELHPVKQKSCLLASMT 503
           N + ++V YI   GI V LHP  QKS ++ + T
Sbjct: 108 NRLNYLVKYI-PPGIRVSLHPSSQKSQMIRNKT 139


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 325  FTLTAEQCSDNLYAGTNVSLSREKRPFACKRRACSVRPT 441
            FT+TAEQC  + +    + L+ EK P A +  +  ++ T
Sbjct: 1167 FTMTAEQCDSSRF--LQMILAHEKNPLAGEDSSDEIKAT 1203


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 472 PDTFSAFLFVVLAVHCMHVFYMQMAFFL 389
           PD ++AFL  ++A+    VFY   A+ L
Sbjct: 66  PDDYNAFLGQIIALIIAPVFYSAQAYVL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,910
Number of Sequences: 5004
Number of extensions: 57158
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)