Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I14
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540...    29   4.6  
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649...    28   8.0  

>06_03_0907 -
           25851673-25852368,25853531-25853585,25853973-25854068,
           25854170-25854435
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 438 WPYTACTSFTCKWPFF 391
           WP TA  + T +WPFF
Sbjct: 160 WPVTAAAAATTRWPFF 175


>06_03_0049 +
           15961706-15962017,15962952-15963851,15964769-15964913,
           15964969-15965705
          Length = 697

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 386 LEKKGHLHVKDVHAVYGQHNEKKCRECVWSHTSLGLKKRCHA 511
           L+ + H H+ D   +Y   ++   R CV +   L + +RCHA
Sbjct: 30  LKYESHRHIWDEPYLYRVCSDGLLRRCVPTEEGLKIIERCHA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,823
Number of Sequences: 37544
Number of extensions: 336533
Number of successful extensions: 767
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)