Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_I13
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom... 145 5e-36
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 36 0.005
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 27 2.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.8
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.0
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.7
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 8.7
>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 145 bits (352), Expect = 5e-36
Identities = 74/194 (38%), Positives = 114/194 (58%), Gaps = 8/194 (4%)
Frame = -2
Query: 745 DFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEEYKAM 566
+ +PFED+S +E K +AAL + +H+KKRPHN+ R F+Y +LDMIELG YK++
Sbjct: 65 NILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYKSI 124
Query: 565 SEFHNIKVLAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFT 386
F ++ G+KP +LF GP ++ + + +KSLF DFF E ++ + GL +V+ +
Sbjct: 125 QSFSATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVS 184
Query: 385 ATDD--------GLIYFRSYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLASDDLXQG 230
A + L++FR Y L K+ PRVELEE+GP IDF +RR + A D+ +
Sbjct: 185 AAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRRVQPAESDVLEE 244
Query: 229 SL*NTERDETNQKE 188
+L + E K+
Sbjct: 245 ALKKPKTQEPKPKK 258
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = -3
Query: 234 KEACKIPREMKPIKKKNISRDAFGTKHGRIHMGKQDINRLQTRKMKG 94
+EA K P+ +P KKN+ D G K GRIH+ +QD+ LQTRKMKG
Sbjct: 243 EEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQTRKMKG 289
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 36.3 bits (80), Expect = 0.005
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = -2
Query: 598 IELGAEEYKAMSEFHNI-KVLAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETI 422
++ E M E + L GS+P L F+ ++ LK +K L F K
Sbjct: 122 VKFHVENLHTMDELNMTGNALKGSRPILSFD-KTFDTAPHLKVVKELLQQTFGIPKGARR 180
Query: 421 RLQGLEHVLSFTATDDGLIYFRSYRISLKKSGQRTPRVELEEIGP 287
++ V + T D G I+FR+Y I + + P V L EIGP
Sbjct: 181 SKPFIDRVCTLTIAD-GKIWFRNYEIRENEDKSKDP-VTLIEIGP 223
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 291 PISSNSTLGVLWPLFLSDILYDLK*IKPSSV 383
P+SS + +G WP F++ IL+ I S V
Sbjct: 194 PLSSKTIVGYSWPYFIAKILFAFSIIFHSGV 224
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 523 MV*NQPGLLYCEILTLPYILQHQVQSYPIFHNQKFYPKQCCGGASCCVNQHQTELPLFCN 702
+V ++PG +Y + +P + + SY HN ++ Q + C+ + L +CN
Sbjct: 574 LVIDKPGFVYHTLNDIPQLNSSTIGSYVHSHNPPYFDYQIRLKSYRCLISTLSSLFTWCN 633
Query: 703 IT 708
T
Sbjct: 634 QT 635
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 297 SSNSTLGVLWPLFLSDILYDLK*IKPSSVAVKLRTCSNPCNLM 425
+S+ L LWP+ +S++L K +VA+ T + C L+
Sbjct: 1502 TSSKHLLPLWPIVVSELLIIFKSYCMPNVAISKETLLDACRLL 1544
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 628 RTFDYGILDMIELGAEEYKAMSEFHNIKVLAGSKPCLLFNGP 503
R FD ++ +++ +K +EF K+ GS+PC + P
Sbjct: 734 RFFDLN-MNEVDMPVGGFKTFNEFFYRKLKPGSRPCAFPDNP 774
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 109 GLQPIDI-LLTHM-NTAVFSSKCISGDIFLF 195
G+Q +I +L H+ N + +S C SG+ FLF
Sbjct: 324 GIQNAEIPVLNHIINAVILTSACSSGNSFLF 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,650
Number of Sequences: 5004
Number of extensions: 54138
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -