Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I13
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical ...   157   1e-38
U39855-4|AAA81083.1|  290|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    29   3.5  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    29   3.5  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    29   3.5  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    29   3.5  
Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    28   6.2  
L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54E10A.10 protein.
          Length = 297

 Score =  157 bits (380), Expect = 1e-38
 Identities = 79/165 (47%), Positives = 109/165 (66%)
 Frame = -2

Query: 733 FEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTFDYGILDMIELGAEEYKAMSEFH 554
           FED + I +   K + +LF +GS+SKK+P+ +  GRT+D  +LDM EL    YK+ S F 
Sbjct: 69  FEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYKSSSNFE 128

Query: 553 NIKVLAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDD 374
             K+  GSKPC++  G A+E + D+KR+ +L  D+F   KV+T+RL+GLE V+ FTA D+
Sbjct: 129 AAKMTLGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLETVIVFTALDE 188

Query: 373 GLIYFRSYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLASDDL 239
             +  R YR  LKKS   TPRVEL E+GPSI F++ R KLA D L
Sbjct: 189 TNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLADDAL 233



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/46 (45%), Positives = 32/46 (69%)
 Frame = -3

Query: 234 KEACKIPREMKPIKKKNISRDAFGTKHGRIHMGKQDINRLQTRKMK 97
           K ACK P+ +   ++KN+S D FG +  R+H+GKQ  + +QTRK+K
Sbjct: 235 KLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDIQTRKVK 280


>U39855-4|AAA81083.1|  290|Caenorhabditis elegans Hypothetical
           protein F18G5.5 protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 272 FEIN*RTYFFQLHSGCSLATFLK*YSVRSEVDQAIISSRETEDM 403
           +E+  + YFFQ HS C +   +    V +   Q I+S+   ED+
Sbjct: 111 YEVALQKYFFQSHSECGITPEVTPIDVSNGTTQVIVSNSTIEDV 154


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 721 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 602
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 114 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 155


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 721 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 602
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 507 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 548


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 721 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 602
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 292 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 333


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 721 SLIEKLCYKKE--AALFGVGSHSKKRPHNIVLGRTFDYGILD 602
           S +E++CY     A+ +    H   +P N +LG TF++  +D
Sbjct: 431 STLEQMCYVAAYAASNYSTTCHRTNKPFNPLLGETFEFDRMD 472


>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = -2

Query: 661 SKKRPHNIVLGRTFDYGILDMIELGAEEYKAMSEFHNIKVLAGSKPCLLFNGPAWELNQD 482
           ++ +P  +V  +   +   D + L  +   AM  F+   +  G + CL+F+    E   D
Sbjct: 289 NRVKPQPLVSIKCSPHSFFDNLVLMGDAAHAMVPFYGQGMNCGFEDCLVFSETLEEYGND 348

Query: 481 LKRLKSLFSD 452
           + +   ++SD
Sbjct: 349 IAKAVKVYSD 358


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 607 IFHNQKFYPKQCCGGASCCVNQHQTELPLFCNITSQSNYC 726
           +F N K +  +     S  V Q +++LP  CN  SQ N C
Sbjct: 61  VFLNDKKFKSELLVSNSATVRQKRSDLPAHCNCLSQ-NQC 99


>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/93 (23%), Positives = 46/93 (49%)
 Frame = -2

Query: 541 LAGSKPCLLFNGPAWELNQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIY 362
           L  S+P L F+  A++    LK +K++                 ++HV +F+  +   I+
Sbjct: 162 LRASRPVLSFDD-AFDKKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIW 220

Query: 361 FRSYRISLKKSGQRTPRVELEEIGPSIDFKLRR 263
           FR+++I + +S      ++L+E+GP    ++ R
Sbjct: 221 FRNFQI-VDES------LQLQEVGPRFVLEMVR 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,414
Number of Sequences: 27780
Number of extensions: 304173
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)