Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I12
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    31   0.21 
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    29   0.64 
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   2.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   3.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = -2

Query: 359 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSMLASLL 180
           E+     S++   S++ KP E  AP S  +IK+D P N     N ++  Q   +   S L
Sbjct: 336 EQSIDVSSDIGLRSDSSKPNE--APTSSENIKADQPENSTKQENPEEDMQIKDAEEHSNL 393

Query: 179 LHPDA*EQTSLKXSN 135
               A +QTS   +N
Sbjct: 394 ESTPAAQQTSEVEAN 408


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 379 TIGGFGFCCCN*LIPSDSNSSSKSGIADNNDSANDSAGIMAMTS 510
           T+GG    C + L+  DSN  SK GI +      D   IM + S
Sbjct: 192 TMGGTKLVCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIMVILS 235


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 251 VVYLILWRYRSKAPPI-L*ALDFQMWPKLRTPFEVFLQA*AER*PSEVSAFV 403
           V+YL +W     +  + + +L +Q W KL  P  VFL       P E   F+
Sbjct: 39  VMYLTMWNSDLNSEALDVNSLQWQTWAKLNDPSIVFLNVSNHASPDEKVPFI 90


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 287 PLSDISIKSDTPHNKEASVNKQKRPQRLKS 198
           P SD SIKS     +E+S +++K P   +S
Sbjct: 182 PESDQSIKSSRNRRRESSFSREKNPDLTRS 211


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 287 PLSDISIKSDTPHNKEASVNKQKRPQRLKSMLASLLL 177
           P S +S+ S++PH ++A+         +  +L +LLL
Sbjct: 61  PESSVSVVSNSPHRQDAATTNTVSTVSVSKVLPALLL 97


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 338  SEVLATSENPKPTESAAPLSDISIKSDTPHN 246
            S  + +S     + SAA  +D S+ +DTP N
Sbjct: 1129 SSTVTSSATASSSSSAATTADSSVTTDTPSN 1159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,071
Number of Sequences: 5004
Number of extensions: 44360
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)