Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_I12
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 30 1.8
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 30 1.8
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 29 4.3
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 7.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 7.4
AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical ... 28 7.4
Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78016-2|CAB01443.1| 240|Caenorhabditis elegans Hypothetical pr... 27 9.8
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.8
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.8
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 27 9.8
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 353 KPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSMLA 189
+P T + +A + K ESA + K TP K A V K+ + LKSMLA
Sbjct: 632 EPTTSQKFIARNTRSKTKESAVQKVE---KPATPVAKPAPVEKEPEERPLKSMLA 683
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 353 KPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSMLA 189
+P T + +A + K ESA + K TP K A V K+ + LKSMLA
Sbjct: 632 EPTTSQKFIARNTRSKTKESAVQKVE---KPATPVAKPAPVEKEPEERPLKSMLA 683
>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
protein F57C7.1b protein.
Length = 1087
Score = 29.5 bits (63), Expect = 2.4
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Frame = -2
Query: 524 VHVNGLVIA-MMPAESFAESLLSAM----PDLEELLESEGINQLQQQXXXXXXXXXXXXP 360
V VN + +A PAE+ A+S S + P ++E+ +++ +++
Sbjct: 45 VQVNDIAVAEASPAETDAKSSASPVSGPEPPTSAVVENRDLDEFKKESGSNDDKQEEIN- 103
Query: 359 EEKPQTESEVLATSENPKP-----TESAAPLSDISIKSDTPHNKEASVNKQKRPQ 210
E+K E V +E+ T+ SD S D H+K SV+ ++PQ
Sbjct: 104 EDKDSNEETVFQQTESGSADVVDKTDVKQKDSDSSADDDHSHSKSGSVHSPQKPQ 158
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
protein F57C7.1a protein.
Length = 1209
Score = 29.5 bits (63), Expect = 2.4
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Frame = -2
Query: 524 VHVNGLVIA-MMPAESFAESLLSAM----PDLEELLESEGINQLQQQXXXXXXXXXXXXP 360
V VN + +A PAE+ A+S S + P ++E+ +++ +++
Sbjct: 45 VQVNDIAVAEASPAETDAKSSASPVSGPEPPTSAVVENRDLDEFKKESGSNDDKQEEIN- 103
Query: 359 EEKPQTESEVLATSENPKP-----TESAAPLSDISIKSDTPHNKEASVNKQKRPQ 210
E+K E V +E+ T+ SD S D H+K SV+ ++PQ
Sbjct: 104 EDKDSNEETVFQQTESGSADVVDKTDVKQKDSDSSADDDHSHSKSGSVHSPQKPQ 158
>Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical
protein F21H7.5 protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 329 LATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLK 201
L ++N PT + A +SD+SIKSD+ E S + P + K
Sbjct: 142 LNKAKNLCPTVNQADVSDVSIKSDSGEKSEKSKALKLVPNQSK 184
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 359 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASV 231
EEK + E +V PKP S P D+ K+D K+ ++
Sbjct: 207 EEKKEDEKKVEPKPGEPKPHISIEPPGDLMFKADQQEQKKLTL 249
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 356 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQ 222
EKPQ S+V+ TS KP +S S S P N S+ KQ
Sbjct: 85 EKPQRSSKVINTSSESKPAQSQIAASQRS-SPGYPQNL-TSIGKQ 127
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 286 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 396
GA +S GF +TS S F SG GG+ T GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 286 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 396
GA +S GF +TS S F SG GG+ T GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393
>AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical
protein T08B6.4 protein.
Length = 631
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 320 SENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 213
S N +S + D+ +++ P N E ++ K KRP
Sbjct: 158 SNNMTGKDSNKDVKDVDVEAANPENPETNICKDKRP 193
>Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical
protein C17E4.1 protein.
Length = 425
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -2
Query: 341 ESEVLATSENPKPTESAAPLSDISIKSDTPHNKEAS--VNKQKRPQR 207
E E T++ P P SAAP+S + KS T N++++ + +QK +R
Sbjct: 95 EPETAETAKTPSP--SAAPVSPVLEKSKTKTNQKSTTEIEQQKIVKR 139
>Z78016-2|CAB01443.1| 240|Caenorhabditis elegans Hypothetical
protein R186.3 protein.
Length = 240
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 103 VICVAIVALATLLXFSDVCSYASGCSNKLASIDFSLCGRFCLFTDAS 243
V+ A++ L T+L + S+AS N++ + CG+ +FT S
Sbjct: 14 VLATAVIGLLTVLLLV-LKSFASSNKNRVLFVGLMDCGKTTIFTQLS 59
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 286 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 396
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 286 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 396
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 286 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 396
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,706
Number of Sequences: 27780
Number of extensions: 251423
Number of successful extensions: 914
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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