Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_I10
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 99 1e-22
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 99 2e-22
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 0.80
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 2.4
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 3.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 4.3
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 5.6
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 5.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 5.6
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 5.6
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 23 7.5
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 7.5
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.9
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 9.9
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 23 9.9
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 23 9.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 23 9.9
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 99.1 bits (236), Expect = 1e-22
Identities = 47/87 (54%), Positives = 56/87 (64%)
Frame = -3
Query: 266 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 87
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 86 XXRMRHLKIVQEALP*WF*RRETNAAA 6
RM +LK V + F + +AA
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPTSAA 87
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 98.7 bits (235), Expect = 2e-22
Identities = 44/73 (60%), Positives = 51/73 (69%)
Frame = -3
Query: 266 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 87
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 86 XXRMRHLKIVQEA 48
RM +LK V +
Sbjct: 61 TGRMSYLKKVHRS 73
Score = 24.2 bits (50), Expect = 4.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 52 RRFRNGFKEGKP 17
R F+NGF+ GKP
Sbjct: 72 RSFKNGFRSGKP 83
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 0.80
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 58 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 171
T+F + +PV+ + FT+ W N A +P A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = -3
Query: 230 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 147
N H C C Y + S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 193 DLPHLLHNVWVLFRRLPKLEVPF-VILSLLTIRKSN 297
++P L H++W++ + KL + F ILS + I N
Sbjct: 710 EIPSLFHSIWIMTGKGLKLWLSFSEILSSVLINTKN 745
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.2 bits (50), Expect = 4.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 167 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 268
+LI+ CD +++ CI + S + + S++ S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 23.8 bits (49), Expect = 5.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 160 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 267
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 5.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 162 PMWISCSKITILPLVSEG*AQEDYW 88
P W+SC+++ +L + +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -3
Query: 239 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 147
KR N L R +Q ++C CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 260 KGTSSFGKRRNKTHTLCRRCGRSS 189
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 21 FPSLKPLRKRLLHNLQM 71
FP L+PL R +H+L +
Sbjct: 197 FPDLEPLMSRTIHSLDI 213
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 256 VPQASVSAEIRPIRYAEDVVDRHITF 179
+PQ S+ + Y ED++D +++F
Sbjct: 704 IPQGSILSSFLCHFYMEDLIDEYLSF 729
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 197 YHIFCITYGSYFGAYRSLRYPSS 265
Y FCI S F SL YP+S
Sbjct: 608 YFQFCIESDSKFDEGTSLEYPNS 630
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 173 IFECDMTIYHIFCITYGSYFGAYRSLRYPSSSCH 274
+F ++Y I YF + LRY S S H
Sbjct: 4 LFILSCSVYDFSSILLHQYFTQFFVLRYASPSMH 37
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 186 SHSKIKMRPMWISCSKITILP 124
SHS MRP+ I + +T+ P
Sbjct: 697 SHSTFTMRPLSIERTTLTVTP 717
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 287 RIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQ 177
+++K ++T +FGK+ H L CG H Q
Sbjct: 47 KVLKYFRITGCLINFGKQPANDHHLWGHCGARLKHTQ 83
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.0 bits (47), Expect = 9.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 274 VTR*RRVPQASVSAEIRPIRYAEDVVDRHITFKNQNAPNVDILQQNYD 131
+TR +PQ S RP+ E +VD IT N N V D
Sbjct: 337 LTRPIEIPQ-HFSPIARPLTSQEAIVDMDITSNNINLSPVSHFSNGLD 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,747
Number of Sequences: 5004
Number of extensions: 22930
Number of successful extensions: 53
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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