Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I09
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    60   1e-10
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    29   0.12 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   0.62 
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    26   1.4  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   2.5  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    24   4.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    24   5.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   5.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   7.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    23   7.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   7.7  

>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 59.7 bits (138), Expect = 1e-10
 Identities = 23/63 (36%), Positives = 42/63 (66%)
 Frame = -3

Query: 282 ASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFL 103
           AS++YSP+SGTVT  N+ + D P  +++S  ++GW+ ++K+    E+  L+ +E Y +F 
Sbjct: 103 ASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFC 162

Query: 102 KTD 94
           K +
Sbjct: 163 KEE 165


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 291 RPIASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTE 124
           RP++ E+ + L   +  K+KDVE +   +N   +    L  L   K++ IN+   E
Sbjct: 245 RPLSEEVVTTLKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINESTLE 300


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 98  VFKNFLYSSSVMRSFISLCLIIFNLNNHPLS*QDVFISAGLSSTSLF 238
           V  NF +S  ++  F+  C++++  NN P    +V  +A ++ + LF
Sbjct: 465 VLGNFDFSGYILNEFVKDCVVVYLENNDP----EVRKTASITCSQLF 507


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 207 INTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLKTDAEKPE*FKLN 64
           INTS + KGW        Q  + +LM E+  +  L  D+  P    LN
Sbjct: 211 INTSAFRKGW---KTAYPQQRLLELMVEQGAQLTLSDDSHGPHQVGLN 255


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 73  KLFWFLSICFQKFLVLFFSHEIIYL 147
           KL WFL+  +   LVL     I+YL
Sbjct: 399 KLLWFLNYGYTDILVLILMLTILYL 423


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 61  LIQLKLFWFLSICFQKFLVLFFSHEIIYLALLNY 162
           L+ +KL +   ICF   L   F + I+YL L  Y
Sbjct: 357 LVPMKLLFTEPICFLITLYSSFVYAILYLLLEAY 390


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 119 SSSVMRSFISLCLIIFNLNNHPLS 190
           S+  +RS +S  L   NLNN PLS
Sbjct: 313 SNKNLRSSLSKLLSTSNLNNKPLS 336


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 261  LSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEI 142
            +S T+      +ED    +  +  DK W FRLK     EI
Sbjct: 2281 MSTTLLRLCVTLEDATFFVTITKEDKAWPFRLKNCTSREI 2320


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 89  SASVFKNF--LYSSSVMRS--FISLCLIIFNLNNHPLS*QDVFISAGLSST 229
           SA+ F  F  LY  + + S   +  CL +FNL   PL+   + +S+ L ++
Sbjct: 494 SAATFGTFIVLYGKTRVLSVDIVFACLSLFNLLQFPLTMLPIVVSSVLEAS 544


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 82  WFLSICFQKFLVLFFSHEIIYLALLNYFQSKQPSFVITRCIY*CWFVFY 228
           + LS+ +   LVLFF    ++  L++   S   SF +   I+  W V +
Sbjct: 650 FLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPWRVIF 698


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 97  CFQKFLVLFFSHEIIYLAL 153
           C  KFL L F +EI+Y A+
Sbjct: 254 CQLKFLKLKFENEILYTAM 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,149,453
Number of Sequences: 5004
Number of extensions: 21024
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)