Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I09
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0525 + 3828035-3828116,3829173-3829261,3829446-3829616,382...    67   3e-12
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    63   5e-11
06_03_1060 - 27275799-27275957,27276017-27276187,27276372-272764...    56   5e-09
10_08_0626 + 19375760-19375868,19376229-19376317,19376846-193770...    52   7e-08
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    28   1.7  

>02_01_0525 +
           3828035-3828116,3829173-3829261,3829446-3829616,
           3829696-3829824
          Length = 156

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 27/65 (41%), Positives = 42/65 (64%)
 Frame = -3

Query: 279 SEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLK 100
           S+IYSP+SG V   N  + D+P L+NTS Y+ GW+ ++K+    E+N LM + +Y KF +
Sbjct: 91  SDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSLMDDAKYSKFCE 150

Query: 99  TDAEK 85
            +  K
Sbjct: 151 EEDSK 155


>02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,
            3769736-3769990,3770763-3770934,3772260-3772910,
            3773659-3774045,3774123-3774155,3774239-3774307,
            3774388-3774463,3775135-3775223,3775442-3775615,
            3775693-3775821
          Length = 907

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 27/63 (42%), Positives = 38/63 (60%)
 Frame = -3

Query: 273  IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKKFLKTD 94
            I SP+SG V E N  + D P L+N   Y+ GW+  +KI    E+N LM +E+Y KF K +
Sbjct: 844  INSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKISDSGELNSLMNDEDYSKFCKGE 903

Query: 93   AEK 85
             +K
Sbjct: 904  KDK 906


>06_03_1060 -
           27275799-27275957,27276017-27276187,27276372-27276460,
           27277381-27277474
          Length = 170

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 10/75 (13%)
 Frame = -3

Query: 279 SEIYSPLSGTVTEKNKDVEDKPAL----------INTSCYDKGWLFRLKIIKQSEINDLM 130
           S+I +P+SG + + N ++ +KP            IN S Y+KGW+ ++KI   SE+N LM
Sbjct: 95  SDINAPVSGEIIQVNDELSEKPGFLTICFCNFTQINGSPYEKGWIIKVKISDPSELNSLM 154

Query: 129 TEEEYKKFLKTDAEK 85
            +E+YKKF + +  K
Sbjct: 155 DDEKYKKFCEEEDGK 169


>10_08_0626 +
           19375760-19375868,19376229-19376317,19376846-19377016,
           19377347-19377472
          Length = 164

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 23/57 (40%), Positives = 36/57 (63%)
 Frame = -3

Query: 279 SEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEEYKK 109
           S+I SP+SG V E N  + + P LIN+S Y+ GW+ ++K    SE++ L+   +Y K
Sbjct: 100 SDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTK 156


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 73  KLFWFLSICFQKFLVLFFSHEIIYLALLNYFQSKQPSFVITRCIY*CWFVFYIF 234
           +L+ FL + FQ   ++ F H  I +  +    S  P+F I   I  C  V  +F
Sbjct: 505 RLWIFLILMFQCLTIIAFHHGKIDIGTIKILVSAGPAFFILNFIECCLDVLLMF 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,387,570
Number of Sequences: 37544
Number of extensions: 99149
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)