Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_I07
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p... 34 0.018
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 27 2.8
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 26 4.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.4
>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 33
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 618 LILTAATCWLFWLCAYMAQMNPLIGP 541
LILT + C+L W Y+AQ++PL P
Sbjct: 3 LILTFSCCYLLWAITYLAQLHPLEAP 28
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 713 RSSFSPSFGVWLVLFAPSSHLKDQ 642
R+ + GVW ++ AP SHL+D+
Sbjct: 50 RAPVNKDLGVWDLVEAPGSHLRDE 73
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 699 SILWGVVGIICPIFAPKGPNRGIIQV 622
++LWG++ +I +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 145 SLFAIERKKKQYTIKHSVESFDT*SFQRMF 56
SLF E K+QYT+ H +E + +RMF
Sbjct: 71 SLFPNEHTKRQYTLNH-LEELEQQFAERMF 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,120
Number of Sequences: 5004
Number of extensions: 65439
Number of successful extensions: 145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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