Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I06
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   1.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   7.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   9.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   9.5  

>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 157 VLPIKFYCTHRNSNGNTETTXVELPVYSRIIKRTKSGYNLRSQ 285
           V+P    C   N++ N  T  ++LP    I KRT S Y+ R +
Sbjct: 29  VIPDAGSCVLANNDINENTVLLKLPPNILINKRTCSRYSFRDK 71


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2    WETQLITNXCSNILAEFSTS 61
            WE  L +N  SN LA+F T+
Sbjct: 1124 WEKFLTSNNYSNYLADFETT 1143


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 158 TNTFVSFYESIFFFVDLTIRYLKQ 87
           T+TF +  E+IFFF  LTI +L +
Sbjct: 137 THTFTNSIETIFFF--LTILFLSK 158


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 CTHRNSNGNTETTXVELPVYSR 243
           C H  + GN+E+T  EL  Y +
Sbjct: 675 CNHYQNYGNSESTEFELSNYKQ 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,396
Number of Sequences: 5004
Number of extensions: 21732
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)