Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_I06
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0260 + 23660883-23662070                                         27   4.0  
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498...    26   9.2  

>05_05_0260 + 23660883-23662070
          Length = 395

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 79  STNCLRYLIVKSTKKKILS*KETNVFVLPIKFYCTHRNSNGNTETTXVELPVYSR 243
           +T+ L  +I  +   K L+ +E N+ V P+  +  H + NGN E   VE+  +SR
Sbjct: 185 TTSVLEDVIHHNKAFKFLT-REENLHVFPVAGF--HEDVNGNLEIPPVEVHRFSR 236


>05_06_0203 +
           26348360-26348458,26349584-26349645,26349808-26349895,
           26349985-26350085,26350130-26350223,26350323-26350730,
           26351090-26351521,26351612-26351755,26351824-26351940,
           26352842-26352949
          Length = 550

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 109 KSTKKKILS*KETNVFVLPIKFYCTHRNSNGNTETTXVEL 228
           KS    +   KETN  VLPI+     R+    T TT  E+
Sbjct: 244 KSVSSVVEPSKETNRKVLPIRLPDPPRSHKATTSTTPAEI 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,727,685
Number of Sequences: 37544
Number of extensions: 116503
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)