Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H24
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 128 1e-30
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 90 3e-19
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 60 3e-10
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.078
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 29 0.55
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.3
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 2.9
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 27 2.9
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 3.9
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 3.9
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 26 5.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 6.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 6.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.9
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 8.9
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 128 bits (308), Expect = 1e-30
Identities = 65/109 (59%), Positives = 81/109 (74%)
Frame = -3
Query: 347 LQEYARRIAKVSIDSKMDLDEDTYVSKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSII 168
LQE ARRIAKVS +SK +L+E+ YV+ FK +LM+VV +WA GASF QICKMTDV+EGS+I
Sbjct: 1010 LQEMARRIAKVSKESKQELNEEEYVNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLI 1069
Query: 167 RCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLQEGHRVRSQSLYV 21
R RRLEE++RQ+ AAK IGNT L+ K D I + V S SLY+
Sbjct: 1070 RMFRRLEELIRQMVDAAKVIGNTSLQQKMEDTIACIHR-DIVFSASLYL 1117
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 90.2 bits (214), Expect = 3e-19
Identities = 48/115 (41%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Frame = -3
Query: 359 IYIFLQEYARRIAKVSIDSKMDLDEDTYVSKFKCTLMDVVLSWAKGASFLQICKMTDVFE 180
+Y+ + E A+RIA VS++SK+ +E Y+ +FK +M+ V W GASF +IC ++ ++E
Sbjct: 919 MYLTIIEAAKRIATVSLESKLQFNESDYLHQFKPDIMEPVSLWINGASFQEICIVSKLYE 978
Query: 179 GSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLQEGHR--VRSQSLYV 21
GSI+R RRL+E+L+QL AA +GN +L+ K ++ Q+ HR + S SLY+
Sbjct: 979 GSIVRTFRRLDELLKQLEHAAIVLGNNELKEK---SVLTEQKLHRDIIFSASLYL 1030
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 60.5 bits (140), Expect = 3e-10
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = -3
Query: 254 LMDVVLSWAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSD 75
LM+V WA+G SF +I +TDV EGSI+R + RL+EVLR+ AA+ +G++ + K +
Sbjct: 1137 LMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEE 1196
Query: 74 AIKMLQEGHRVRSQSLYV 21
+++ + V SLY+
Sbjct: 1197 CQNLIRR-NIVFCPSLYM 1213
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 32.3 bits (70), Expect = 0.078
Identities = 23/87 (26%), Positives = 41/87 (47%)
Frame = +1
Query: 214 NEAPLAHDRTTSMSVHLNLLT*VSSSKSILESIDTFAIRRAYSCKKIYITIKYSTLLFFI 393
+ +P + ++S + + VS+S I+ S +I + S Y+TI+ +T + I
Sbjct: 75 SSSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSIHQQVSVVTEYVTIQPTTYVTTI 134
Query: 394 LQYQNTVKTFESQSISRNIFQXVPISY 474
QY + T +QS I VP +Y
Sbjct: 135 FQYTSLASTIAAQS---GIASLVPQTY 158
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 29.5 bits (63), Expect = 0.55
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 25 YKDWLRTRCPS*SIL----IASLNLFSKSVLPMFLAAWHSCRNTSSKRLIHLIIEPSKTS 192
Y WL+ R P L IAS +L K VL + + WH + K LIHL SK++
Sbjct: 80 YPTWLKFRVPMLKNLVIDHIASRDL-QKRVLNILIDLWHFNPSEIEKSLIHL-STTSKSA 137
Query: 193 VILHICKNEAPLAHDRTTSMSV 258
C LAH+ S V
Sbjct: 138 ETRIQCFKWFVLAHNAHLSFDV 159
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 280 VSSSKSILESIDTFAIRRAYSC-KKIYITIKYSTLL 384
+S++ SIL IDT A+ R YSC +K+ TI +L
Sbjct: 1113 LSTADSILSLIDTEALSRYYSCQQKVEDTIPRDVVL 1148
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 293 LDEDTYVSKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSIIRCMRRLEEV 141
+DE ++ L+D +SW SFL+ D ++ I + L+EV
Sbjct: 273 VDEIIRAERYMLMLLDFDISWPGPMSFLRRISRADSYDHDIRMLAKYLQEV 323
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 124 WHSCRNTSSKRLIHLIIEPSKTSV 195
+HSC S L+HL+I PS+ ++
Sbjct: 633 YHSCHAASFIILVHLLINPSEQTI 656
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +1
Query: 124 WHSCRNTSSKRLIHLIIEPSKTSVILHICKNEAPLA 231
W++CR+ + H++ P+ +++ IC P A
Sbjct: 159 WYTCRHCHNDACDHVLERPAVENMLCMICSKVQPAA 194
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 233 WAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQ 123
WA G +IC +T FEG R E+ R +CQ
Sbjct: 210 WALGCVIFEICMLTHPFEG------RSYLELQRNICQ 240
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 115 LAAWHSCRNTSSKRLIHLIIEPSKTSVILHICKNEA 222
LAA+H ++ + EPSK V++H +E+
Sbjct: 120 LAAFHKAHGAEGTIVVTKVEEPSKYGVVVHYPNSES 155
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 140 LRQLCQAAKNI-GNTDLENKFSDAIKMLQEGHRVRSQSL 27
L QL Q +K++ T + FS+ K+ QEG + S L
Sbjct: 858 LVQLKQLSKHLLSETKQDESFSELAKIFQEGSNITSHEL 896
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 209 QICKMTDVFEGSIIRCMRRLEEVLRQLC 126
Q+ ++ D + ++ C R+ E +LR LC
Sbjct: 1027 QLIRLMDRYRHPVVSCGRKRELILRALC 1054
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 325 IRRAYSCKKIYITIKYSTLLFFILQYQNTVKTFESQSISRNIFQXVP 465
I+ S K + +T + TL F LQY+ E+ S RN+ +P
Sbjct: 3495 IKHLKSRKHLLLTETFKTLKAFGLQYRVKAGIEENLSNLRNLLAVIP 3541
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 595 MIFNSILSTTTHMYNKHIIIPRGERLFK 678
MI NS L+T+ YN +P+ ERL +
Sbjct: 212 MIPNSSLNTSNQSYNLMDCVPKVERLIR 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,971
Number of Sequences: 5004
Number of extensions: 68691
Number of successful extensions: 163
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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