Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H24
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 112 3e-25
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 97 2e-20
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 71 1e-12
01_01_0156 - 1364856-1365401 31 1.0
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 31 1.3
01_01_0148 - 1337494-1338057 29 3.1
06_01_0115 - 901385-901495,902134-902163,902847-902927,903019-90... 29 4.0
01_01_0151 - 1346942-1347682 29 4.0
01_01_0150 - 1344247-1345011 29 4.0
01_01_0153 - 1352982-1353731 29 5.3
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 28 7.1
02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249... 28 9.3
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 28 9.3
>12_01_1023 + 10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 112 bits (269), Expect = 3e-25
Identities = 55/118 (46%), Positives = 83/118 (70%)
Frame = -3
Query: 374 EYLIVIYIFLQEYARRIAKVSIDSKMDLDEDTYVSKFKCTLMDVVLSWAKGASFLQICKM 195
E L +++ LQE ARR+A + +D K+ +D +++V+ F+ +M+ V SWAKG+ F QI +M
Sbjct: 851 EELDLLFFQLQETARRVANLQLDCKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEM 910
Query: 194 TDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLQEGHRVRSQSLYV 21
T VFEGS+IR +RRLEEVL+QL A+K+IG T LE K +A+ ++ V + SLY+
Sbjct: 911 TQVFEGSLIRAIRRLEEVLQQLILASKSIGETQLEAKLEEAVSKIKR-DIVFAASLYL 967
>11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 96.7 bits (230), Expect = 2e-20
Identities = 52/110 (47%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Frame = -3
Query: 347 LQEYARRIAKVSIDSKMDLDEDTYV-SKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSI 171
LQE AR+IA+V + K++++ + YV S + LMDV+ W+KGA+F ++ +MTD+FEGSI
Sbjct: 839 LQEAARKIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSI 898
Query: 170 IRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLQEGHRVRSQSLYV 21
IR RRL+E L QL AA+ +G +LENKF A L+ G + + SLY+
Sbjct: 899 IRLARRLDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRG-IMFANSLYL 947
>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Frame = -3
Query: 347 LQEYARRIAKVSIDSKMDLDEDTYV-SKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSI 171
+ + A R+ K+ + K+ +D + Y K L++VV WAKG F IC++TDV EG I
Sbjct: 1317 IYDTAIRLGKLQREFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLI 1376
Query: 170 IRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLQEGHRVRSQSLYV 21
+R + RL+E R+ AA +GN+ L K A ++ V + SLYV
Sbjct: 1377 VRTIVRLDETCREFRNAASIMGNSALHKKMETASNAIKR-DIVFAASLYV 1425
>01_01_0156 - 1364856-1365401
Length = 181
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 145 RCCDSCARLPRTLATPTWRIN-SVTRSKC 62
+CCD+ RLP P WR N + SKC
Sbjct: 51 KCCDNIERLPTKTNPPQWRCNDELEPSKC 79
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 218 SFLQICKMTDVFEGSIIRCMRRL-EEVLRQLCQAAKNIGNTDLENK 84
S ++C + DV E R EEVL +CQ KNI N L+ K
Sbjct: 180 SLREVCSLDDVTERMGSHMSREACEEVLVMMCQICKNIDNGRLKMK 225
>01_01_0148 - 1337494-1338057
Length = 187
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 145 RCCDSCARLPRTLATPTWRI-NSVTRSKCFKR 53
+CCD+ RLP + P W+ + + +CF++
Sbjct: 51 KCCDNIVRLPERINPPFWQCDDELEPGQCFRQ 82
>06_01_0115 -
901385-901495,902134-902163,902847-902927,903019-903084,
903207-903284,904708-904791,904881-904970,905069-905345,
905765-905973
Length = 341
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 341 EYARRIAKVSID-SKMDLDEDTYVSKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSIIR 165
E +A++ D S + +D+ T + + + +V S +G LQ + T G +
Sbjct: 249 ESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAERTQKKGGMVSA 308
Query: 164 CMRRLEEVLRQLCQAAK 114
CM L +C AAK
Sbjct: 309 CMHGGAVTLVFVCAAAK 325
>01_01_0151 - 1346942-1347682
Length = 246
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 145 RCCDSCARLPRTLATPTWRI-NSVTRSKC 62
+CCDS +LP+ + P WR + + KC
Sbjct: 116 KCCDSIVQLPQRIFPPFWRCDDELEPGKC 144
>01_01_0150 - 1344247-1345011
Length = 254
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 145 RCCDSCARLPRTLATPTWRINSVTR-SKCF 59
+CCD+ RLP + P WR + + +CF
Sbjct: 123 KCCDNIRRLPPRIHPPFWRCDDELKPGQCF 152
>01_01_0153 - 1352982-1353731
Length = 249
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 145 RCCDSCARLPRTLATPTWRIN-SVTRSKC 62
+CCD+ RLP P WR N + S+C
Sbjct: 119 KCCDNIKRLPTKPDPPQWRCNDELEPSQC 147
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -3
Query: 350 FLQEYARRIAKVSIDSKMDLDEDTYVSKFKCTLMDVVLSWAK 225
F++E+ R++ +V+ D++ +D + + L D VLSWA+
Sbjct: 51 FVREWMRQVCEVAYDAEDCIDLYFCRCRVRLQLSDGVLSWAR 92
>02_03_0137 +
15624078-15624101,15624259-15624312,15624900-15624954,
15625192-15625296,15625682-15625722,15626057-15626162,
15627010-15627016,15627134-15627218,15627315-15627428
Length = 196
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 128 TAVATPPPNVSYILLLNLQKHQSSCISARTKLLWPM 235
TA+ PP S + L + ++ SC+ RT LL P+
Sbjct: 59 TALTGYPPQFSMLHLTPMSLYEVSCLMGRTLLLSPL 94
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -3
Query: 320 KVSIDSKMDLDEDTYVSKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSIIRCMRRLEEV 141
KV+ DS L + K L V A+ F+ IC +FEG + + L +
Sbjct: 187 KVARDSLCSLILGSPAGKVYSKLRAVSARLAESNRFVMICLFYRLFEGMCQKPDKLLPRI 246
Query: 140 LRQLCQAAKNIGNTDLENKFS 78
+ Q A+N+ L + F+
Sbjct: 247 VTPFLQNARNVDIVKLPSVFA 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,871,522
Number of Sequences: 37544
Number of extensions: 388960
Number of successful extensions: 849
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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