Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H22
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    65   8e-12
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    35   0.014
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.51 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.6  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.3  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   6.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   8.3  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
 Frame = -2

Query: 625 TFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFGMIS 446
           TF +N G I +TK  +RR   F A ++   G+  K  AVF+ IP PV+GG+   +F  ++
Sbjct: 404 TFAQNNGVISLTKCANRRAGFFCAVILFFMGLFAKFAAVFVAIPSPVLGGMTTFLFSSVA 463

Query: 445 AFGLSALQYVDLNSSRNLYIIGFSLFF---PLVLTRWMA---AHSGVIHTGLEALDAVLQ 284
             G++ +  +  N  RN +I+  S+      +++  W      +SG     +  LDA+  
Sbjct: 464 VSGIAIISQIPFN-RRNRFILTASMTLGMGAILVPDWFTYFFEYSGPNKALVGFLDAI-T 521

Query: 283 VLLSTSILVGGAVGCLLDNVXPW 215
           +++     +G  +   L+ + P+
Sbjct: 522 LVMENGFAIGAFISIFLNLILPY 544


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -2

Query: 595 VTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFGMISAFGLSALQYV 416
           + +V  +R   F  GLM +  + G L  V   IPQ V+ GLF VM G  + FG    Q V
Sbjct: 368 IDRVVEQRASNFIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVM-GFSAIFGNGITQNV 426


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 459 NITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSPKVLVP 635
           N T   PPTT       TAP  PTT  ++       TT  + T V P     +   +VP
Sbjct: 91  NTTTTVPPTTSLNTTTTTAP--PTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVP 147


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 477 PPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSP 620
           PPT+      N+ P LPTT  S     +   T    +L TP+ PT  P
Sbjct: 151 PPTSTSSTDTNSNP-LPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 197



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 456 PNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSP 620
           P IT+    T+      +++  LP+T  S     +   T    +L TP+ PT  P
Sbjct: 86  PIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 140



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 477 PPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFS 617
           PPT+      N++P LPTT  S     +   T    T VTP  P  S
Sbjct: 264 PPTSTSSTDTNSSP-LPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 309


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 438 PKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 611
           P A  +P++ Q  PP      ++  APS+P  P + + P      +R    V P AP+
Sbjct: 581 PVAPEVPSVPQ--PPVAP---VVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPS 633



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
 Frame = +3

Query: 222 ITLSNRQPTAPPTSMEVDXXXXXXXXXXXXPVCMT--PL*AAIHRVRTSGKN-RLNPMMY 392
           ++ +N  PT P T+ ++             P   T  P   +     TSG++  LNP   
Sbjct: 428 VSENNDPPTFPKTAAKISSFNSKAGTSFAKPRPFTNNPNPISAPEKPTSGESLSLNPPP- 486

Query: 393 RFLELFRSTY*SAERPKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTT 572
              ++F     S+   KA   P++     P      ++  APS+   P + + P      
Sbjct: 487 AMPKVFPERDISSASQKA-AQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAP 545

Query: 573 RRDPTLVTPMAPTFSPKVLVP 635
           +R    V P AP+   +  VP
Sbjct: 546 QRPAAPVVPEAPSVPQRPAVP 566



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 438 PKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 611
           P A  +P++ Q RP       ++  APS+P  P + + P      +R    V P AP+
Sbjct: 611 PVAPEVPSVPQ-RPAVP----VVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPS 663


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 344 PPGQDQRE--KQAEPYDVQVPRAVQVHI-LKC*ETEGRYHSEHNAEEAADYGLRDDDEHG 514
           P G  + E  KQ +   ++ P   ++H+  K  E   R  SEHN  E       ++ EH 
Sbjct: 152 PSGDFRNEGPKQCDDSKIEKP---ELHVNSKIEEPIHRIDSEHNEPEYHTESKNEESEHN 208

Query: 515 SQ-LAHDPLQHHEAGGE 562
           ++ +  +P+ H ++  E
Sbjct: 209 TKSIREEPIHHVDSKNE 225


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 203 SSSVPGXHVVQQTADGAPHEYGGGQQHLEHRVQRLQP 313
           +SSV G   V  + D A +++ G + HL + V  + P
Sbjct: 156 ASSVGGPTAVGVSLDEAQNDFNGAKDHLSNGVNTVVP 192


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 432 ERPKADIIPNITQKRPPTTGCGMMM 506
           E+  +++IPN+++ R P   CG ++
Sbjct: 226 EKTHSNLIPNLSRVRSPQQACGRIL 250


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 368 KQAEPYDVQVPRAVQVHILKC 430
           ++ EPY + +  A++ HI KC
Sbjct: 31  QENEPYAISIVNAIEKHIQKC 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,442
Number of Sequences: 5004
Number of extensions: 50183
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)