Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H21
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   3.5  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   4.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.1  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   8.1  

>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 7   IFI*NKDLE*QIYXQLNKXSAFCFSFIRSFSVEVYCS-SIQR 129
           + +  ++L  Q+Y  L K +AFC   IR  +V    S ++QR
Sbjct: 93  LLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 88  RSFSVEVYCSSIQRSSI*RKLLLKIAEQCLGV 183
           R+FSV+ Y + I + ++    LLK  +QC G+
Sbjct: 611 RNFSVDDYDTLITKCTLYASKLLKKPDQCCGI 642


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = +1

Query: 415 MHALANLSQYLFK-TDFA-----IVRGT*LPFDYDLFKLHFLL 525
           +H L  LSQ  +K  DF      ++RG  L F+   FKL FLL
Sbjct: 360 LHILLQLSQLYYKYNDFQLSAAYVIRGYSLSFEDISFKLKFLL 402


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 390 CMRHGYMVDACTGQPFSIFI 449
           C+ +G++  ACTG PFS+ I
Sbjct: 168 CVTYGFLY-ACTGIPFSVAI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,886
Number of Sequences: 5004
Number of extensions: 51018
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)