Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H21
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579     30   2.1  
08_02_0046 - 11576005-11576106,11576529-11576631,11576985-115770...    28   6.4  
12_02_0987 - 25060266-25060461,25061124-25063351                       28   8.4  

>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
          Length = 824

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +1

Query: 370 FRQCHIHACAMDIWWMHALANLSQYLFKTDFAIVRGT*LPFDYDLFKLHFLLVNTLFQPL 549
           F    +HA   D +  H +     YL     +  RG  LPF+ DL++  FL VNT F   
Sbjct: 101 FLPAKLHADFYDGFCKHYMWPHLHYLLPLAPSYGRGGGLPFNGDLYRA-FLTVNTHFAER 159

Query: 550 VIQL 561
           V +L
Sbjct: 160 VFEL 163


>08_02_0046 -
           11576005-11576106,11576529-11576631,11576985-11577022,
           11577244-11577290,11577392-11577694,11579595-11579703
          Length = 233

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 393 CMNMTLSKIFVAVFYLYFSLLIFKFYL 313
           C NM LS++ ++   L F +L+F F+L
Sbjct: 158 CFNMILSRLDLSTLDLTFGILVFFFFL 184


>12_02_0987 - 25060266-25060461,25061124-25063351
          Length = 807

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 377 SVIFMHAPWIYGGCMHW 427
           S++FMH  W +GG + W
Sbjct: 553 SILFMHNGWSFGGLLDW 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,344
Number of Sequences: 37544
Number of extensions: 251959
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)