Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H21
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000261-6|AAB52928.1|  317|Caenorhabditis elegans Serpentine re...    29   3.3  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    29   4.3  

>AF000261-6|AAB52928.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein97 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 353 KTATN--ILDSVIFMHAPWIYGGCMHWPTFLNIYLKQILL*SVELDFRLTMIFLNCTFF* 526
           KT +N  IL   +  + P   G   + P F+N+ L Q+    + +   +T + ++   F 
Sbjct: 67  KTVSNSIILFCYLIFNGPVSVGRSYYGPEFMNMLLNQMAAYGIYVQGPMTQVCISFNRFM 126

Query: 527 LIHFFSL 547
           +I+F SL
Sbjct: 127 VIYFVSL 133


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 488 RLTMIFLNCTFF*LIHFFSLWLFSYIPTNYQ-NTDFASLSQ 607
           +L+   L C +F LI  FS  +F +IP N   N+ FA + Q
Sbjct: 179 KLSGFKLQCAYFALIGLFSYAIFYFIPENMSFNSVFARIWQ 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,098
Number of Sequences: 27780
Number of extensions: 267674
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)