Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H19
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 223 2e-59
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 181 1e-46
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 28 1.6
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 2.2
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 2.9
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.7
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 8.7
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 223 bits (545), Expect = 2e-59
Identities = 106/177 (59%), Positives = 144/177 (81%), Gaps = 1/177 (0%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V++TLR+L RP LP+IY LG+DYDERVLPSI +E+LK+VVAQFDA ELITQRE+VS
Sbjct: 87 VSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVS 146
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
K+ L +RA +FG+ L+D+SITH+TFGKEFT+AVE KQ+AQQEAE+ARFLVE++EQ++
Sbjct: 147 AKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQER 206
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLA-KSRNVTYLPHG 214
+A VI AEG+A+AA +++K+ AG L+++RR+E ++++A LA K VTYLP G
Sbjct: 207 QANVIRAEGEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGAQVTYLPFG 263
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 181 bits (440), Expect = 1e-46
Identities = 89/173 (51%), Positives = 127/173 (73%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
VNI R+L RP LP+IY LG DYDERVLPSI +EVLK+VVAQF+A +LITQRE VS
Sbjct: 97 VNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVS 156
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
+ V ++L +RAA+F ++LDD+S+TH+ F EFT AVE KQ+AQQ+A++A F V++A +K
Sbjct: 157 RLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEK 216
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYL 223
+ ++ A+G+ +AA L+ ++ + G +ELR++E A +IA L+KS N L
Sbjct: 217 QGFIVRAQGEGRAAQLIGEAIKNK-PGFIELRKLETAREIANILSKSNNKVML 268
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 27.9 bits (59), Expect = 1.6
Identities = 28/141 (19%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Frame = -3
Query: 744 NVNITLR-ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 568
NV++ L +L+ V D Y + DY + + +++ + + ++ +R+
Sbjct: 111 NVSLGLDGVLYIQVYDPYKASYGVEDADY---AISQLAQTTMRSEIGRLTLDHVLRERQS 167
Query: 567 VSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQ 388
++ + D++ + A +G+ I + + A+ +QV+ AE+
Sbjct: 168 LNIHITDAINKAAESWGIRCLRHEIRDIRPPESVVMAMH-QQVS-------------AER 213
Query: 387 QKKAAVIAAEGDAQAAVLLAK 325
QK+A ++ +EG QAA+ +A+
Sbjct: 214 QKRAEILESEGKRQAAINVAE 234
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 405 VEKAEQQKKAAVIAAEGDAQAAVLLA 328
+E+ E+QK AA AAE +AQ A A
Sbjct: 213 IEREEEQKAAAAAAAEEEAQLAAQTA 238
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 405 VEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAG-EGLVELRRIEAAED 265
+ +E+ + A I+A GD LLAK+ G EG++ ++ D
Sbjct: 169 ITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISD 216
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 408 LVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAA 271
L+ + ++ + A+V + D + FG G G+ +LRRI A
Sbjct: 532 LLSRTDEVESASVAQIDMDINRTMAKNVFFGGKGPGIPKLRRILVA 577
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = -3
Query: 687 IYTILGIDYDERVLPSITSEVLKAVVAQ----FD---AGELITQREIVSQKVNDSLTER 532
IYT+ I ER+ I + L A+++Q FD AGE+ T+ + + D L E+
Sbjct: 159 IYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITTDTNFIQDGLGEK 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,258
Number of Sequences: 5004
Number of extensions: 44424
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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