Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H19
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0362 - 22366668-22367516 224 7e-59
04_04_0143 - 23091613-23092467 218 4e-57
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 196 1e-50
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 194 6e-50
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 128 5e-30
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 58 6e-09
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045... 33 0.24
05_07_0324 - 29266764-29267131,29267231-29267419,29267552-292676... 33 0.24
08_02_0583 + 19006495-19006683,19006954-19007060,19007124-190072... 33 0.32
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435... 32 0.56
05_01_0488 - 4070506-4072277,4072455-4072557 30 1.7
02_02_0280 - 8515894-8517309 30 1.7
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 29 3.0
07_03_1499 - 26998149-26998258,26998345-26998388,26998792-269989... 29 3.9
07_03_1593 + 28001165-28001193,28001214-28001288,28002004-28002796 29 5.2
01_06_1481 - 37675793-37677325 28 6.9
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 28 6.9
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 28 9.1
>02_04_0362 - 22366668-22367516
Length = 282
Score = 224 bits (547), Expect = 7e-59
Identities = 106/178 (59%), Positives = 150/178 (84%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V++TLR+L RP D+LP I+T LG++YDE+VLPSI +EVLKAVVAQF+A +L+T+R VS
Sbjct: 94 VSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVS 153
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
V DSL RAA+F ++LDD++ITHL +G EF+QAVE KQVAQQEAE++RFLV +AEQ++
Sbjct: 154 ALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQER 213
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQN 208
+AA++ AEG+++AA L++++ +AG GL+ELRRIEAA++IA +LA+S NV+Y+P G +
Sbjct: 214 RAAIVRAEGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPNVSYIPAGDS 271
>04_04_0143 - 23091613-23092467
Length = 284
Score = 218 bits (532), Expect = 4e-57
Identities = 104/178 (58%), Positives = 146/178 (82%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
VN+TLR+L RP LP I+T LG++YD++VLPSI +EVLKAVVAQF+A +L+T+R VS
Sbjct: 93 VNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTERPHVS 152
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
V D+L RA +F +ILDD++ITHL++G EF+QAVE KQVAQQEAE+++FLV KAEQ++
Sbjct: 153 ALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKAEQER 212
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQN 208
+AA++ AEG++++A L++++ +AG GL+ELRRIEAA +IA +LA+S NV Y+P G N
Sbjct: 213 RAAIVRAEGESESARLISEATAAAGTGLIELRRIEAAREIAAELARSPNVAYVPAGDN 270
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 196 bits (479), Expect = 1e-50
Identities = 99/187 (52%), Positives = 140/187 (74%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS
Sbjct: 92 VRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVS 151
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
+++ LTERA+ F + LDD+SIT L+FGKEFT A+E KQVA QEAE+A+F+VEKAEQ K
Sbjct: 152 REIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDK 211
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVL 202
++A+I A+G+A++A L+ ++ + + LR+IEAA +I++ +A S N YL +++L
Sbjct: 212 RSAIIRAQGEAKSAQLIGEAINN-NPAFLALRQIEAAREISHTMASSNNKVYL-DSKDLL 269
Query: 201 LNLPTQN 181
L L N
Sbjct: 270 LGLQQLN 276
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 194 bits (473), Expect = 6e-50
Identities = 97/183 (53%), Positives = 138/183 (75%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS
Sbjct: 170 VKIGLRVLTRPMPEKLPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVS 229
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
+++ LTERA F + LDD+SIT L+FGKEFT A+E KQVA QEAE+A+F+VEKAEQ K
Sbjct: 230 REIRKILTERARNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDK 289
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVL 202
++A+I A+G+A++A L+ ++ + + LR+IEAA +I++ ++ S N +L ++L
Sbjct: 290 RSAIIRAQGEAKSAELIGQAIAN-NPAFLALRQIEAAREISHTMSSSANKVFL-DSNDLL 347
Query: 201 LNL 193
LNL
Sbjct: 348 LNL 350
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 128 bits (309), Expect = 5e-30
Identities = 62/107 (57%), Positives = 82/107 (76%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS
Sbjct: 257 VKIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVS 316
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAE 421
+++ LTERA+ F + LDD+SIT L+FGKEFT A+E KQ + A+
Sbjct: 317 REIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQGEAKSAQ 363
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 58.4 bits (135), Expect = 6e-09
Identities = 29/71 (40%), Positives = 47/71 (66%)
Frame = -3
Query: 570 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAE 391
+++ ++++L AQ+ + I +F KEFT A+E KQV +QEA++A+F+VEKAE
Sbjct: 402 VLTSLMHETLKAVVAQYNA--SQLIIPRESFRKEFTHAIETKQVDEQEAQRAKFIVEKAE 459
Query: 390 QQKKAAVIAAE 358
Q K+ AVI +
Sbjct: 460 QHKRKAVITEQ 470
>10_08_0298 -
16603417-16603775,16604015-16604203,16604420-16604540,
16604671-16604880
Length = 292
Score = 33.1 bits (72), Expect = 0.24
Identities = 29/150 (19%), Positives = 63/150 (42%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V + I +R + D+ Y L + + S +V++A + + + + Q+ ++
Sbjct: 75 VTVVASIQYRAMEDKASDAYYKLSNPKSQ--IQSYVFDVIRASIPKLELDDAFLQKNEIA 132
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
+ V + L + +G + I + ++ +A+ A + A EKAE +K
Sbjct: 133 RAVEEELEKAMLAYGYEIVQTLIVDIEPDEKVKRAMNEINAAARLRVAAN---EKAEAEK 189
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVE 292
+ AEG+A+A L + +V+
Sbjct: 190 IIQIKRAEGEAEAKYLSGLGIARQRQAIVD 219
>05_07_0324 -
29266764-29267131,29267231-29267419,29267552-29267672,
29268041-29268229
Length = 288
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/113 (21%), Positives = 50/113 (44%)
Frame = -3
Query: 630 EVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVE 451
+V++A V + + + Q+ +++ V D L + + +G + I + + +A+
Sbjct: 103 DVIRASVPKLNLDDAFEQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMN 162
Query: 450 LKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVE 292
A + A EKAE +K + AEG+A+A L + +V+
Sbjct: 163 EINAAARLRVAAN---EKAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVD 212
>08_02_0583 +
19006495-19006683,19006954-19007060,19007124-19007289,
19007362-19007458,19008011-19008366
Length = 304
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/112 (21%), Positives = 49/112 (43%)
Frame = -3
Query: 627 VLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVEL 448
V++A V + + + Q+ +++ V D L + + +G + I + + +A+
Sbjct: 124 VIRASVPKMNLDDAFEQKNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNE 183
Query: 447 KQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVE 292
A + A EKAE +K + AEGDA++ L + +V+
Sbjct: 184 INAAARLRVAAN---EKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVD 232
>09_03_0032 +
11742279-11742398,11743318-11743359,11743394-11743555,
11743768-11743888,11744104-11744195,11744271-11744371,
11744592-11744949
Length = 331
Score = 31.9 bits (69), Expect = 0.56
Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
V + + +R + D+ + L ++ + S +V++A V + + + Q+ ++
Sbjct: 113 VTVVASVQYRALADKASDAFYKLSNTREQ--IQSYVFDVIRATVPKLNLDDAFEQKNDIA 170
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQ-EAEKARFLV-EKAEQ 388
+ V D L + + +G + I + V +K+ + A K R EKAE
Sbjct: 171 KAVEDELEKAMSAYGYEIVQTLII------DIEPDVHVKRAMNEINAGKLRVAANEKAEA 224
Query: 387 QKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVE 292
+K + AEG+A++ L + +V+
Sbjct: 225 EKILQIKKAEGEAESKYLAGVGIARQRQAIVD 256
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 30.3 bits (65), Expect = 1.7
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Frame = -3
Query: 663 YDERVLPSITSEV----LKAVVAQF--DAGELITQREIVSQKVNDSLTE---RAAQFGLI 511
YDE+ S+ SE L +A D L++++ +V KV LT+ R + +
Sbjct: 476 YDEKANESLNSEKEISRLNQELANVKTDLELLLSEKSLVDNKVTTLLTDITTRDEKMKQM 535
Query: 510 LDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLL 331
D ++ L K QA ++ + + L ++ E QK +AEG +A L
Sbjct: 536 DDQLNQLQLEHSKLMAQADLARKSLSELHARVCELEKEVEMQKLVISESAEGKREAIRQL 595
Query: 330 AKSFGSAGEGLVELRRI 280
S G ELR++
Sbjct: 596 CFSLEHYRSGYQELRQL 612
>02_02_0280 - 8515894-8517309
Length = 471
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 486 LTFGKEFTQAVELKQVAQQEAEK-ARFLVEKAEQQKKAAVIAAEG 355
+T T A + K+V A K A + EKAEQ K+AA AA+G
Sbjct: 285 VTLSTGATVAQKAKEVTADTAHKVAEYAREKAEQGKEAAARAADG 329
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 456 VELKQVAQQEAEKARFLVEKAEQQ-KKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRI 280
VE E +KAR L K + KKAA +AAE + LAK+ + + ELR
Sbjct: 27 VEAASEISSEKKKARELQRKLDAATKKAAKLAAENSS-----LAKALDAKDAAIGELRES 81
Query: 279 EAAEDIAYQLAKSR 238
++A D A++R
Sbjct: 82 KSASDGELAGARAR 95
>07_03_1499 -
26998149-26998258,26998345-26998388,26998792-26998902,
26998976-26999088,26999195-26999260,26999344-26999481,
26999989-27000084,27000178-27000302,27000807-27001020
Length = 338
Score = 29.1 bits (62), Expect = 3.9
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Frame = -3
Query: 726 RILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE-----IVS 562
R L R D L + +LG+ ERVLP+ TS + + D G + QR VS
Sbjct: 177 RTLVRGTLDYLQGL-KMLGVKRTERVLPTGTSLTVVGEAIKDDVGTIRIQRPHKGPFYVS 235
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
K D L ++ + S+ FG F A K+ Q E+ R + E QK
Sbjct: 236 PKSIDQLIMNLGKWAKLYQLASMGFAAFG-VFLLA---KRALQHFLERKR----RHELQK 287
Query: 381 KAAVIAAEGDAQAA 340
+ AA+ A+ A
Sbjct: 288 RVHAAAAQRQAREA 301
>07_03_1593 + 28001165-28001193,28001214-28001288,28002004-28002796
Length = 298
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 441 VAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLA 328
+A +AE+ R L+E+ + + A + AE A+AAV LA
Sbjct: 232 LAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLA 269
>01_06_1481 - 37675793-37677325
Length = 510
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 441 VAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGS-AGEGLVELRR 283
+A++ K R ++E E ++ + +AA G+A AAV K G+ AG LRR
Sbjct: 424 MAEEIEGKIRLVMESEEGERLRSSVAAHGEA-AAVAWRKDGGAGAGSSRAALRR 476
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 375 AVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRN 235
A A G +A + A S G G +E++RIE + K RN
Sbjct: 108 AAAAPAGSGSSAAVAAGSSEKMGRGKIEIKRIENTTNRQVTFCKRRN 154
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 420 KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAA 271
K++ +V AEQ+KKA +A G + ++A + + G E+R +E A
Sbjct: 568 KSKSIVVSAEQKKKATPVAGGGGGEIDNMMA-AMAARGPLEFEVRELEEA 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,294
Number of Sequences: 37544
Number of extensions: 256772
Number of successful extensions: 713
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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