Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H19
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 280 9e-76
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 179 2e-45
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 34 0.094
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 34 0.094
AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical ... 33 0.16
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 32 0.50
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 30 2.0
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 30 2.0
U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine rece... 29 2.7
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 2.7
Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 29 4.7
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 4.7
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 4.7
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 6.2
Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81532-8|CAB04327.2| 248|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 280 bits (686), Expect = 9e-76
Identities = 139/184 (75%), Positives = 162/184 (88%)
Frame = -3
Query: 744 NVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIV 565
NVNITLRIL RP PD+LP IY +G+DY ERVLPSIT+EVLKAVVAQFDA E+ITQRE+V
Sbjct: 90 NVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVV 149
Query: 564 SQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQ 385
SQ+ + +L ERAAQFGL+LDDI+ITHL FG+EFT+AVE+KQVAQQEAEKAR+LVEKAEQ
Sbjct: 150 SQRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQM 209
Query: 384 KKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNV 205
K AAV AEGDAQAA LLAK+F SAG+GLVELR+IEAAE+IA ++AK++NVTYLP Q
Sbjct: 210 KIAAVTTAEGDAQAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQQT 269
Query: 204 LLNL 193
LLNL
Sbjct: 270 LLNL 273
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 179 bits (435), Expect = 2e-45
Identities = 93/183 (50%), Positives = 133/183 (72%)
Frame = -3
Query: 741 VNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 562
VNI LR+L RP P+ L IY LG +++ERVLPSI +EVLK VVA+F+A +LITQR+ VS
Sbjct: 101 VNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVS 160
Query: 561 QKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQK 382
V +L ERA F +ILDD+S+T L F +++ AVE KQVA QEA++A F VE+A+QQK
Sbjct: 161 MLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQQK 220
Query: 381 KAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVL 202
+ ++ AEG+A++A LL ++ + G ++LR+I AA+ IA +++S N TYLP G ++
Sbjct: 221 QEKIVQAEGEAESAKLLGEAMKN-DPGFLKLRKIRAAQKIARIVSESGNKTYLPTG-GLM 278
Query: 201 LNL 193
LN+
Sbjct: 279 LNI 281
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/142 (19%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Frame = -3
Query: 738 NITLR---ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 568
N+ LR +L+ V D G+D E + + +++ V + + + +RE+
Sbjct: 96 NVQLRLDGVLYLRVFDPYKACDASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKEREL 155
Query: 567 VSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQ 388
+++ + ++ + +A +G+ I + + +A++++ A++ K R + ++E
Sbjct: 156 LNENIVFAINKASAPWGIQCMRYEIRDMQMPSKIQEAMQMQVEAER---KKRAAILESEG 212
Query: 387 QKKAAVIAAEGDAQAAVLLAKS 322
++AA+ AEGD ++A+L +++
Sbjct: 213 IREAAINRAEGDKKSAILASEA 234
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 34.3 bits (75), Expect = 0.094
Identities = 29/145 (20%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Frame = -3
Query: 687 IYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLIL 508
I +++G+ + L+ ++ E+++ RE +S + SL E +G+ +
Sbjct: 139 ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKV 198
Query: 507 DDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLA 328
+ + + + + +A+ + A ++A A +IAAEG+ +A+ LA
Sbjct: 199 ERVELRDVRLPSQMQRAMAAEAEATRDAG--------------AKIIAAEGELRASAALA 244
Query: 327 K--SFGSAGEGLVELRRIEAAEDIA 259
+ + S EG ++LR + I+
Sbjct: 245 EAATIISKSEGAMQLRYLHTLNAIS 269
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 34.3 bits (75), Expect = 0.094
Identities = 29/145 (20%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Frame = -3
Query: 687 IYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLIL 508
I +++G+ + L+ ++ E+++ RE +S + SL E +G+ +
Sbjct: 139 ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKV 198
Query: 507 DDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLA 328
+ + + + + +A+ + A ++A A +IAAEG+ +A+ LA
Sbjct: 199 ERVELRDVRLPSQMQRAMAAEAEATRDAG--------------AKIIAAEGELRASAALA 244
Query: 327 K--SFGSAGEGLVELRRIEAAEDIA 259
+ + S EG ++LR + I+
Sbjct: 245 EAATIISKSEGAMQLRYLHTLNAIS 269
>AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical
protein Y71H9A.2 protein.
Length = 298
Score = 33.5 bits (73), Expect = 0.16
Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = -3
Query: 681 TILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDD 502
+++ I+ R + L+ ++ E+++ R+++S ++ +L E +G+ ++
Sbjct: 133 SVINIEDAARSTKLLAQTTLRNILGTKTLTEMLSDRDVISLQMQATLDETTIPWGVKVER 192
Query: 501 ISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKS 322
+ + K+ +L++V EAE R + K +IAAEG+ A+ LA++
Sbjct: 193 VEM------KDVRLPYQLQRVMAAEAEATRDAMAK--------IIAAEGEKNASTALAEA 238
Query: 321 FG--SAGEGLVELRRIEAAEDIA 259
S ++LR ++ I+
Sbjct: 239 ADVISMSPCAIQLRYLQTLNSIS 261
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = -3
Query: 639 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 460
+ L+ ++ E+++ RE ++ + L E +G+ ++ + I K+
Sbjct: 185 LAQTTLRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEI------KDVRL 238
Query: 459 AVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLL--AKSFGSAGEGLVELR 286
++L++ EAE R + +A VIAAEG+ +A+ L A S + ++LR
Sbjct: 239 PIQLQRAMAAEAEATR--------EARAKVIAAEGEQKASRALRDAASVIAQSPAALQLR 290
Query: 285 RIEAAEDIA 259
++ +A
Sbjct: 291 YLQTLNSVA 299
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -3
Query: 726 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 559
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 558 KVNDSLTERAAQFGLILDDISITHLTFGKE 469
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -3
Query: 726 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 559
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 558 KVNDSLTERAAQFGLILDDISITHLTFGKE 469
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein20 protein.
Length = 286
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 71 NAILHIVCITNAKHRIKFRLYCTFFINIQLVNLTLI*FCVGRFSS 205
+A L I +H YC F NI LVN TLI + F S
Sbjct: 149 HADLWIFSYPETEHCNHLTWYCDFIFNIVLVNFTLILNLIAAFKS 193
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = -3
Query: 462 QAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 283
+A + KQ+ EAEKAR EKA +++K A + +A AA + E RR
Sbjct: 1155 RAAKTKQM--DEAEKARLEAEKAAEKEKKAKERKKMEASAAAAPESTNSITAR---EERR 1209
Query: 282 IEAAEDI 262
I+ AE++
Sbjct: 1210 IQQAEEM 1216
>Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical
protein T05C12.5 protein.
Length = 168
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -3
Query: 465 TQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGS 313
T +V +Q+ + A+ R L+EK ++ K V + + + +++ KSF S
Sbjct: 27 TSSVAKRQIESKNAQLLRQLIEKKNKKLKKKVYSNAEEQEIDLIIQKSFDS 77
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -3
Query: 462 QAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEG-----L 298
+A + KQ+ EAEKAR EKA +++K A E + + + S +A E
Sbjct: 1163 RAAKTKQM--DEAEKARLEAEKAAEKEKKAKEREEAKERKKMEVEASAAAAPESSNSITA 1220
Query: 297 VELRRIEAAEDI 262
E RRI+ AE++
Sbjct: 1221 REERRIQQAEEM 1232
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 426 AEKARFLV-EKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 283
A +A FL E+A Q+++A A DAQA +A GL+EL R
Sbjct: 437 AGEAEFLKWEEARQKREAVAAAPYEDAQAHQFVASPPPHVSSGLIELIR 485
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 426 AEKARFLV-EKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 283
A +A FL E+A Q+++A A DAQA +A GL+EL R
Sbjct: 449 AGEAEFLKWEEARQKREAVAAAPYEDAQAHQFVASPPPHVSSGLIELIR 497
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -3
Query: 669 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 490
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 606 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 665
Query: 489 HLTFGKEFTQAVE 451
F E+ E
Sbjct: 666 FRRFADEYVADTE 678
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -3
Query: 669 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 490
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 647 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 706
Query: 489 HLTFGKEFTQAVE 451
F E+ E
Sbjct: 707 FRRFADEYVADTE 719
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 621 KAVVAQFDAGELITQREIVS-QKVNDSLTERAAQFGLILDDIS 496
K +V +F A E + ++++ S +K++ LTE GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507
>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
protein W04A4.5 protein.
Length = 1071
Score = 27.9 bits (59), Expect = 8.1
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Frame = -3
Query: 702 DQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKV--NDSLTER- 532
D PRI IL +D +E + I + LK D+G L ++ +K+ D + E+
Sbjct: 174 DFKPRIEDILPMDEEEDEISMIDALYLKP---NLDSGVLTIYTMVLREKIIQADEVPEKI 230
Query: 531 --AAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAE 358
A+ L IS T T A++ VA + + E++ Q ++ +
Sbjct: 231 KLCARRSLAYSSISST-----ANRTAAIDF-HVALAISSSSSTSEEESAAQCESLLTRLA 284
Query: 357 GDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKS 241
GD V SA EGL+ L + YQLAK+
Sbjct: 285 GDRDFRVRK-----SAAEGLLALSNVFKLSKATYQLAKT 318
>Z81532-8|CAB04327.2| 248|Caenorhabditis elegans Hypothetical
protein F36F2.4 protein.
Length = 248
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -3
Query: 399 KAEQQKKAAVIAAEGDAQAA 340
KA Q +KA ++AAE DAQAA
Sbjct: 105 KAAQTEKAGMVAAEMDAQAA 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,961
Number of Sequences: 27780
Number of extensions: 254960
Number of successful extensions: 743
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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