Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H14
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    39   0.003
06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579...    33   0.27 
03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995     31   0.62 
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201...    29   2.5  
01_01_0135 + 1231687-1232188,1234489-1234564,1234646-1234743,123...    28   5.8  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -2

Query: 342 PGLFLCSLTDPIGAAKRSRHAHDTWKSLGVKVNWKCWDKSPHIQHFIYHTEEYLAAL 172
           P L  CS  D +      +        LG  VN   W  SPH+ H+ +H EEY AA+
Sbjct: 200 PILIFCSEDDELAPCSIVQKFGRRLLELGGDVNLVKWQNSPHVGHYKHHPEEYRAAV 256


>06_01_0775 -
           5795329-5795801,5796582-5796720,5796810-5797049,
           5797278-5797313,5797421-5797501,5797937-5797994,
           5799440-5799630
          Length = 405

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -2

Query: 342 PGLFLCSLTDPIGAAKRSRHAHDTWKSLGVKVNWKCWDKSPHIQHFIYHTEEYLAAL 172
           P L LCS  D +               LG  V    W  SPH+ H++ H  EY +A+
Sbjct: 206 PVLMLCSEDDDLAPCHVVCGFARRLIELGTDVKVIKWSDSPHVGHYMLHEAEYRSAV 262


>03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995
          Length = 417

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 405 DVATKHYMRATQVYHNTPCRAPGLFLCSLTDPIGAAKRSRHAHDTWKSLGVKVNWKCW 232
           D A K++   T+++    C   G     L D +G A R R A+D  +++ VKV  K W
Sbjct: 304 DDALKYFDVLTKIFGVEAC---GDHYSCLVDVLGRAGRLRQAYDVIQTMPVKVTAKAW 358


>12_02_0611 +
           21118777-21119066,21119501-21119594,21119742-21120182,
           21120267-21120866
          Length = 474

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 475 HSIWKSNGDFIHIGW*VPNLCVNTVENGLVP 567
           H++W+ +G  I  GW + +L +N +E   +P
Sbjct: 65  HAVWRVHGGGIRHGWSMRDLLLNPIEEVAIP 95


>01_01_0135 +
           1231687-1232188,1234489-1234564,1234646-1234743,
           1234841-1235355
          Length = 396

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 437 ALRAFWRILFLGNTAFGSPMGISYTSAGESQICALTR--SRTGWYLSL 574
           A+RAF  +  +G    G+PMG S  +A      AL R  S   W+++L
Sbjct: 109 AVRAFGNVDVVGRPTAGTPMGSSGLAATLRAAAALLRLDSEWDWFVTL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,009
Number of Sequences: 37544
Number of extensions: 361138
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)