Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H13
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    30   0.40 
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    27   3.7  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    26   6.5  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.6  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +3

Query: 288 YIMNITCCLTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADS 467
           +I N     T+S + +  E   SK    +  LNRPK LNA+   +   +   +   + +S
Sbjct: 43  FIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLE-ES 98

Query: 468 NIAAIIITKNS 500
           N+A +II K +
Sbjct: 99  NLAKVIILKGN 109


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +1

Query: 451 ILTPTATLLPSSSLRIVLSDVVTVAIEI 534
           +LT T+  + +S  R+VL+++ TVAI++
Sbjct: 20  VLTNTSLAVANSLRRVVLAEIPTVAIDL 47


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 292 MYVHISEYCTWQYYHYIRINHI 227
           M V++SE+  W+ Y + +IN +
Sbjct: 1   MEVYLSEFINWKLYEFKKINEL 22


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 363 NVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITKNSPI 506
           N+G+      K+L  LC    V+L K+ ND D + ++ + +  K + +
Sbjct: 215 NIGVSSNTNTKSLFGLCVHNPVDLNKSDNDKDINEDLESKLREKKATV 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,922
Number of Sequences: 5004
Number of extensions: 51995
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)