Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H13
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     50   1e-06
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908     31   0.73 
01_01_0334 - 2698347-2699020,2699321-2699477,2699576-2699647,269...    29   5.2  
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063...    28   9.0  
02_01_0237 - 1570395-1571225,1572225-1572245,1572336-1572506,157...    28   9.0  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 333 IKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITKNSPI*C 512
           I VE       V ++ +NRPKALNAL +P+ V L  A    DAD  +AA+++       C
Sbjct: 12  ILVEPAKPGSRVAVVTINRPKALNALTRPMMVSLAAAFRRLDADDGVAAVVLAGRGRAFC 71

Query: 513 S 515
           S
Sbjct: 72  S 72


>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
          Length = 88

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 16/62 (25%), Positives = 36/62 (58%)
 Frame = +3

Query: 318 ASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITKN 497
           A+ E +K  V  +   V +I L+RPKALNA+   + +     +++++ + ++  +++  +
Sbjct: 5   AAEEFVKGRV--TPNGVAVITLDRPKALNAMNLEMDLRYKAFLDEWETNPSVKCVLVESS 62

Query: 498 SP 503
           SP
Sbjct: 63  SP 64


>01_01_0334 -
           2698347-2699020,2699321-2699477,2699576-2699647,
           2699697-2700641,2701183-2701259,2701908-2702064
          Length = 693

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 447 NDFDADSNIAAIIITKNSPI*CSHRSHRNYSMNTIIHLVP 566
           N  D   N  +  + K   I    RSHR+ SM+ ++H VP
Sbjct: 166 NTQDGCDNDTSSSLLKRGDIHVKQRSHRSISMDGVLHKVP 205


>02_05_0164 +
           26405052-26405208,26405304-26405473,26406278-26406352,
           26406570-26406660,26406768-26406848,26407192-26407353,
           26407425-26407501,26407670-26407846
          Length = 329

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 312 LTASYENIKVEVVGSKKNVGLIQ--LNRPKALNALCKPLFVELGKAVNDFDADSNIAAII 485
           + A  E ++++ + S  + G+++  L RP+A NA+ + +   L  A+    AD+    ++
Sbjct: 35  ILAQQEPVRLQKL-SAPDSGIVEMRLERPEARNAIGREMLQGLRSAIEKVKADATAKVVL 93

Query: 486 ITKNSP 503
           +  + P
Sbjct: 94  LASSVP 99


>02_01_0237 -
           1570395-1571225,1572225-1572245,1572336-1572506,
           1572942-1573070,1574364-1574657
          Length = 481

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -3

Query: 590 SVKIRSSDRYQVDDGIHAVISMATVTTSDRTILSDD----DGSNVAVGVKIIDCLP 435
           SV++ S +     DGIH   S A    S R    DD       + AV ++ IDC P
Sbjct: 242 SVRVDSPEDSPNTDGIHVADSTAVTIQSCRIATGDDCISISNGSFAVRMRDIDCGP 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,314
Number of Sequences: 37544
Number of extensions: 300856
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)