Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H12
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   0.85 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   6.0  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    24   7.9  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 224 NFDHEF*SVLFSVDTEI*QRLVRCF*KKINHLQVMQILKN 343
           N +H+    LF +DT    R+ +   KKI  L+V QIL+N
Sbjct: 48  NVEHKPNDALFVIDTLGDDRIAKRSRKKIKPLKVDQILEN 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 177  VTCQN*QLSIPVIAQ*ILIMSSDLFYFLSILKSSND 284
            ++CQ   L +PV  Q I +  S L YF+++  S+ D
Sbjct: 3840 MSCQLLMLFLPVCEQFINLAESVLDYFINVHNSNLD 3875


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 328 HDLEMVNFFLETSYQSLLDFSIDRK*NRSELMI 230
           HD+E  NF+    +Q +   S+D+K    + +I
Sbjct: 762 HDIEEKNFYRSLDHQGVSFKSVDKKSTTPKFLI 794


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 43  KKNTFAESFNIFLIESSYN 99
           KK+   ESF I L+ S YN
Sbjct: 128 KKSDEVESFTIVLVSSKYN 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,032
Number of Sequences: 5004
Number of extensions: 22766
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)