Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H12
         (350 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U05877-1|AAA16956.1|  337|Homo sapiens AF-1 protein.                   28   7.2  
U05875-1|AAA16955.1|  337|Homo sapiens AF-1 protein.                   28   7.2  
BC003624-1|AAH03624.1|  337|Homo sapiens interferon gamma recept...    28   7.2  
AY644470-1|AAT45458.1|  337|Homo sapiens interferon gamma recept...    28   7.2  

>U05877-1|AAA16956.1|  337|Homo sapiens AF-1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 59  PNRLTYF*LNLATTLSKNNIHNSNQRGNVFCTQTMADFSSDMSKLTAVN 205
           P+R+    +      +K+NI       N+ C +TMAD S+++ ++  ++
Sbjct: 204 PSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADASTELQQVILIS 252


>U05875-1|AAA16955.1|  337|Homo sapiens AF-1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 59  PNRLTYF*LNLATTLSKNNIHNSNQRGNVFCTQTMADFSSDMSKLTAVN 205
           P+R+    +      +K+NI       N+ C +TMAD S+++ ++  ++
Sbjct: 204 PSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADASTELQQVILIS 252


>BC003624-1|AAH03624.1|  337|Homo sapiens interferon gamma receptor
           2 (interferon gamma transducer 1) protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 59  PNRLTYF*LNLATTLSKNNIHNSNQRGNVFCTQTMADFSSDMSKLTAVN 205
           P+R+    +      +K+NI       N+ C +TMAD S+++ ++  ++
Sbjct: 204 PSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADASTELQQVILIS 252


>AY644470-1|AAT45458.1|  337|Homo sapiens interferon gamma receptor
           2 (interferon gamma transducer 1) protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 59  PNRLTYF*LNLATTLSKNNIHNSNQRGNVFCTQTMADFSSDMSKLTAVN 205
           P+R+    +      +K+NI       N+ C +TMAD S+++ ++  ++
Sbjct: 204 PSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADASTELQQVILIS 252


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,136,782
Number of Sequences: 237096
Number of extensions: 618504
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)