Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H12
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical ...    28   1.6  
Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.      27   2.9  
AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z77658-9|CAE17786.2|  201|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    26   8.7  
AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical
           protein T11F1.2 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 VFCTQTMADFSSDMSKLTAVNSCHSPMNFDH 235
           +F +  MADF+ D+ KLT  + C     F++
Sbjct: 44  LFLSCVMADFNYDLEKLTLTHKCDPQCTFNY 74


>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
          protein T03F6.5 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 19 NLSISKXQKKNTFAESFNIFLIESS 93
          N +I++  + N ++ESF++FL ESS
Sbjct: 12 NRAIAEYMQNNGYSESFSVFLKESS 36


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 19 NLSISKXQKKNTFAESFNIFLIESS 93
          N +I++  + N ++ESF++FL ESS
Sbjct: 12 NRAIAEYMQNNGYSESFSVFLKESS 36


>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 VFCTQTMADFSSDMSKLTAVNSCHSPMNFDH 235
           +F    ++DF+ D+ KLT  + C     F+H
Sbjct: 9   LFIPFILSDFAYDLEKLTLTHKCDLQCTFNH 39


>Z77658-9|CAE17786.2|  201|Caenorhabditis elegans Hypothetical
           protein F14D7.9 protein.
          Length = 201

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 SLKIIFIILINAGMYFVLKRW 164
           SL +IF + +N  ++FV K W
Sbjct: 124 SLSVIFFLSLNRCLFFVAKNW 144


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 255 FLSILKSSNDWYDVSKKKLTISKS 326
           FL++L++  +W D+SK+   IS++
Sbjct: 414 FLNLLETKTEWNDISKRVDLISRA 437


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 255 FLSILKSSNDWYDVSKKKLTISKS 326
           FL++L++  +W D+SK+   IS++
Sbjct: 414 FLNLLETKTEWNDISKRVDLISRA 437


>AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical
           protein ZK355.6 protein.
          Length = 465

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 161 MADFSSDMSKLTAVNSCHSPMNFDH 235
           +ADF+S++ KL+  + C     F+H
Sbjct: 12  LADFNSNLEKLSLTHKCDPLCTFNH 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,899
Number of Sequences: 27780
Number of extensions: 123132
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)