Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H10
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0162 + 17858802-17861168 32 0.37
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 31 0.86
01_06_1402 + 37052996-37053449,37053533-37053630,37053718-370538... 31 0.86
12_01_0750 - 6754126-6755248,6755331-6755791 31 1.1
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 30 2.0
09_04_0180 + 15367737-15367755,15368874-15369739 29 2.6
09_06_0264 - 21929086-21931368 29 3.5
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 3.5
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 3.5
01_07_0139 - 41385823-41386656 29 3.5
01_05_0490 + 22672241-22674679 29 3.5
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 29 4.6
11_06_0610 - 25449085-25453284 28 6.1
09_02_0113 + 4408171-4409415,4409902-4409907 28 6.1
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 6.1
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 28 6.1
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 28 6.1
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 28 6.1
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 28 8.0
06_01_0127 - 977667-978719,978875-979051 28 8.0
>03_04_0162 + 17858802-17861168
Length = 788
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 237 SDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPP 133
S G++ +PEA+L PT T + +S A PPP
Sbjct: 664 SCGKLDKNKIPEAQLNYPTITVPLPRSSSSAAPPP 698
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 279 PHPECLHPPSFQCSSDG-EVGPQVVPEARLQLPTH--TAQVEEASPQATPPP 133
P P + P+ Q GP + P+ RLQLP H + Q +E + + PP
Sbjct: 253 PRPPFIQQPALQFDGGSFPPGPSLPPDFRLQLPPHALSRQPDETTGAQSAPP 304
>01_06_1402 +
37052996-37053449,37053533-37053630,37053718-37053888,
37054017-37054117,37054928-37055063,37055155-37055205,
37055311-37055598,37055896-37056130,37056408-37056523,
37057300-37057496,37057739-37057745
Length = 617
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 258 PPSFQCSSDGEVGPQVVPEARLQLPTHTAQVE-EASPQATPPPTVDPDRTK 109
P + SD E GP P + L P A EA PQ PPP P RT+
Sbjct: 60 PRPAEAPSDLESGPPARPNSALPPPPAAAAANAEAKPQPPPPP--PPARTR 108
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 478 PARSLEWG*RSGSLVAEGNRLRFLVAVR-XW-YRQGSGGDDQVCTPGPLKAP 627
P L W S A G R F+VA R W +R+G GD C G L P
Sbjct: 212 PREFLRWLTSQPSWAALGGRDHFMVAARTTWMFRRGGAGDSLGCGNGFLSRP 263
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 647 PPARSRTGAFNGPGVHT*SSPPDPCRYQXRTATRKRSLLPSATREPDLQPHS 492
PP R PG+ T P TAT KR+ P++T P PH+
Sbjct: 43 PPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAPPPPPHA 94
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = -2
Query: 279 PHPECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKNCK 100
P P P D E+ P+ P + +PT + + P+ P P DP+ +
Sbjct: 109 PKPGLDPEPDTNVEPDLELEPEPPPPRPMPIPTPSPRPRPPDPEPKPDPEPDPELEPEPE 168
Query: 99 P 97
P
Sbjct: 169 P 169
>09_06_0264 - 21929086-21931368
Length = 760
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 583 QTLADTXYVPQQENEVYYPQQPENPIFSPTQATELADPTEKV 458
+TLAD +P+ E E +P++ +SP+Q +PT V
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/70 (25%), Positives = 26/70 (37%)
Frame = -1
Query: 658 AFMYRQPEAAQAPSTGQVYIPDRRRQTLADTXYVPQQENEVYYPQQPENPIFSPTQATEL 479
+ + R E A P T Y P Y PQ + E Y P QP+ + P +
Sbjct: 209 SLLARDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQP-QPQRETYPPQPQVQP 267
Query: 478 ADPTEKVELY 449
P + + Y
Sbjct: 268 YPPKPQGQPY 277
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 116 RSGSTVGGGVACGDASSTCAVCVGNCSR 199
++G ++G GD S C+V VG C R
Sbjct: 71 KAGRSLGSASGGGDCSLVCSVLVGGCGR 98
>01_07_0139 - 41385823-41386656
Length = 277
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 116 RSGSTVGGGVACGDASSTCAVCVGNCSRASGTTCGPTSPSEEHWKEGGCRHSGWG 280
R S G C A++TC+ C+G C+ A G SP W+ G R S WG
Sbjct: 228 RGRSARGSPSWCRSAAATCSWCLG-CTSARGR----GSP----WRTSGRRPSWWG 273
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 198 RLQLPTHTAQVEEASPQATPPPTVDPDR 115
RL +VEE +P ATPPP P R
Sbjct: 446 RLDAVLEEMRVEEVAPAATPPPPARPRR 473
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 660 PRSCTASPKPHRRLQRARCTYLIVAARPLPIPXTYRNKKTKSITLSNQRTRSSAPLKRP 484
PR + SP P R R + + RP P P + ++L+ R+R +P P
Sbjct: 11 PRFVSPSPSPAVAATRRRLRFPLAPPRPRPPPLRWSPPSPFRLSLTLSRSRRHSPPPPP 69
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = -2
Query: 279 PHPECLHPPSFQCSSDG----EVGPQVVPEARLQLPTHTAQVEEASPQATPPP 133
P PE PPS S E P P + P+H V + ++TPPP
Sbjct: 891 PPPEGKSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAKSTPPP 943
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 185 GNCS-RASGTTCGPTSPSEEHWKEGGCRHSGWGEVVFFFVFLNRPLRLFP 331
G CS RA G T + +W EG C H+ G++ + R L+L P
Sbjct: 217 GECSWRALPRDTGVTVAFDPYWFEGRCVHAA-GDIYWHICHSGRLLKLDP 265
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -2
Query: 276 HPECLHPPSFQCSSDGEVGPQV-VPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKNCK 100
+P PP +GP++ +P + + EEA P PPP P + +
Sbjct: 158 NPSGAPPPGKPPMYKSSIGPRIPLPSSSAGASSSMPGTEEAGPSTLPPPPPPPPLPASSE 217
Query: 99 P 97
P
Sbjct: 218 P 218
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 547 LVAVRXWYRQGSGGDDQVCTPGPLKAPVRLRA 642
+V + W+R G G + P P PV++ A
Sbjct: 43 VVILAVWFRSGGGAPPKAAAPPPRPPPVKIEA 74
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 557 TATRKRSLLPSATREPDLQ--PH 495
T +++ SLLPS REPDL+ PH
Sbjct: 123 TLSKQNSLLPSRIREPDLELPPH 145
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -2
Query: 273 PECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATP-PPTVDPDRTKNCKP 97
P+ LHP V +P + + QV A PQ P PP P + ++ KP
Sbjct: 36 PQQLHPRGLPVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQPQPVPRPPVAVPLKPESPKP 95
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 231 GEVGPQVVPEARLQLPTHTAQVEEASPQATPPP 133
GE G +V + +L H A+++ A P PPP
Sbjct: 362 GEAGGSLVSKDGKKLGDHAARIKSAYPLPLPPP 394
>06_01_0127 - 977667-978719,978875-979051
Length = 409
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -2
Query: 654 SCTASPKPHRRLQRARCTYLIVAARPLPIPXT 559
S T SP +R L R+ +IVA RPLP+P T
Sbjct: 257 SSTMSPTFYRVLLRS----IIVAGRPLPVPPT 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,568,438
Number of Sequences: 37544
Number of extensions: 421001
Number of successful extensions: 1842
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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