Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H08
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RKP9 Cluster: Chromosome 5 SCAF15026, whole genome sh...    36   1.4  
UniRef50_A0CJ54 Cluster: Chromosome undetermined scaffold_191, w...    33   7.4  

>UniRef50_Q4RKP9 Cluster: Chromosome 5 SCAF15026, whole genome shotgun
            sequence; n=2; Tetraodontidae|Rep: Chromosome 5
            SCAF15026, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1310

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = +2

Query: 380  INYYYVTKPILSTCHTSQFFLKLSSVQLGNLRFLIKFQLLQLHRNHTNIIMMLQF*AAGV 559
            + Y+++TKP++S+  TSQ  L L SV L N   +  + LL+ H NH ++  +L     G 
Sbjct: 888  LRYFHLTKPLISS--TSQAKLSL-SVLLQNRCLIEAWSLLRQHSNHLDMSELL-----GF 939

Query: 560  LYTSLLDLLAGLINK 604
            LY S  +L  GLI +
Sbjct: 940  LYESCQEL--GLIKE 952


>UniRef50_A0CJ54 Cluster: Chromosome undetermined scaffold_191,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_191,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 546

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 215 DFYCDNDKTQLNYSNILLLFECLQCMHDFVTEVSPLILLHRCRTMSSRQLI 367
           D   D DK +L  S  LLL + L+     V ++ P  ++H C    +  ++
Sbjct: 381 DIIADEDKKELAQSEFLLLIKLLKVNPQLVMQIPPQFIVHLCELTDTTDIL 431


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,278,492
Number of Sequences: 1657284
Number of extensions: 12190912
Number of successful extensions: 25480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25470
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)