Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H07
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 97 4e-21
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 38 0.003
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 32 0.12
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 31 0.16
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 30 0.38
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 29 1.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 1.2
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 28 1.5
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 2.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 4.7
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 6.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 8.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 8.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 8.2
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 96.7 bits (230), Expect = 4e-21
Identities = 52/114 (45%), Positives = 69/114 (60%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRERSRXXXXXXAVMDMDEEDPVPEIS 700
+AK T GFSGADL + QRA KLAI+ + E +I RE V+ MDE+ V ++
Sbjct: 694 VAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEAPADDVV-MDEDASVSQVQ 752
Query: 699 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTKRGSYRGHGY 538
R H EEAMK ARRSVSD ++R+YE +A L SRG T F+F + + G +
Sbjct: 753 RHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQFDSADSNTNGPSF 805
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = -2
Query: 858 FSGADLTEICQRACKLAIRQAXEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEA 679
FSGADL + + A A+R A A+I + +P+ ++ A FE A
Sbjct: 696 FSGADLAALVREAAVTALRSAVFADIASNEPE-------ITQHSALEPI-RVTNADFELA 747
Query: 678 MKFARRSVSDNDIRKYEMFAQ 616
K + SVSD D +KY+ A+
Sbjct: 748 FKNIKPSVSDRDRQKYQRLAK 768
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = -2
Query: 858 FSGADLTEICQRACKLAI-RQAXEAEIHRERSRXXXXXXAVMDMDEEDPVPE--ISRAHF 688
F+GAD+ +C A AI R+ E ++ + S +E E I++ F
Sbjct: 862 FTGADMYALCSDAVLSAIKRKTNEIDLLIQASGTDLSTEEFFKRNENQDSLELRITKEDF 921
Query: 687 EEAMKFARRSVSDNDIRKYEM 625
++K R S+S+ ++ +YEM
Sbjct: 922 LTSLKKLRPSISEQELHRYEM 942
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRERSRXXXXXXAVMDMDEEDPVPEIS 700
+ +T+G+SG+D+T + + A +R +A + + +P IS
Sbjct: 583 LVNLTEGYSGSDITALAKDAAMGPLRNLGDALL----------------TTSAEMIPPIS 626
Query: 699 RAHFEEAMKFARRSVSDNDIRKYE 628
HF+ +++ R SVS I +YE
Sbjct: 627 LNHFKASLRTIRPSVSQEGIHRYE 650
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAE 784
IA+ T+G SGA++ +CQ A +A+ + EA+
Sbjct: 741 IAEKTEGCSGAEVVALCQEAGLIAMHEDLEAK 772
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 264 KRKEKNTKPARESDCASQSHKIHVSNVNLIYS 169
++K+K+ KP E+ +S +K SNVNL YS
Sbjct: 498 RKKQKSLKPDTENQESSVKNKKAKSNVNLQYS 529
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 882 YIAKVTQGFSGADLTEICQRACKLAIRQ 799
++A+ T G+ GADL +C A A+R+
Sbjct: 572 HLAESTSGYGGADLKALCTEAALNAVRR 599
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIR 802
+A +T GF+GAD+ +C +A R
Sbjct: 496 LAVLTSGFTGADIMNVCNEGALIAAR 521
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 23 VKSATLPRTGRRYSKYSSYPTTYNMNLRAT*FGP 124
VKS+T P +G ++ SSYP T +L + P
Sbjct: 235 VKSSTSPFSGSKFLSSSSYPHTPEAHLNSNHISP 268
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 559 ELQGARVLQRATSPRSRRRGVTTTCTAKLCLA 464
+L+ A LQ+ PR+RR+G T +AK LA
Sbjct: 1411 KLKAAERLQKPAIPRTRRKGHTEPKSAKSLLA 1442
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 595 LRNQLQIPNKTRELQGARVLQRATSP 518
L N++++ N+ R L+G ++L T+P
Sbjct: 388 LENRIRVENRLRSLEGGKLLPLPTAP 413
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 559 ELQGARVLQRATSPRSRRRGVTTTCTAKLCLARDL 455
ELQ V + SPR R GVT TA++ R +
Sbjct: 60 ELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKI 94
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRE 772
+AK+T G+SG+D++ + + A +R+ A +E
Sbjct: 323 LAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKE 358
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 454 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 356
G + R TN C C+ TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRE 772
IA+ T GF+GADL + +A A + A R+
Sbjct: 465 IARGTSGFAGADLANLINQAAVYASKNLSTAVSMRD 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,000
Number of Sequences: 5004
Number of extensions: 59072
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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