Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H07
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 157 7e-39
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 156 2e-38
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 156 2e-38
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 32 0.47
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 32 0.62
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 31 1.4
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 31 1.4
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 29 3.3
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 29 3.3
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical protein
C06A1.1 protein.
Length = 809
Score = 157 bits (382), Expect = 7e-39
Identities = 79/112 (70%), Positives = 90/112 (80%), Gaps = 3/112 (2%)
Frame = -2
Query: 882 YIAKVTQGFSGADLTEICQRACKLAIRQAXEAEIH--RERSRXXXXXXAVMDMDEEDPVP 709
++AK T GFSGADLTEICQRACKLAIR++ E EI +ER +M+ D DPVP
Sbjct: 681 FLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVP 740
Query: 708 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP-TKRGS 556
EI+RAHFEEAMKFARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP +RGS
Sbjct: 741 EITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGEQRGS 792
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 156 bits (379), Expect = 2e-38
Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 2/106 (1%)
Frame = -2
Query: 882 YIAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRERSRXXXXXXAVMDMDEE--DPVP 709
++AK T GFSGADLTEICQRACKLAIR++ E EI +E+ R M++E DPVP
Sbjct: 679 FLAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVP 738
Query: 708 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 571
EI+RAHFEEAMKFARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 739 EITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 156 bits (379), Expect = 2e-38
Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 2/106 (1%)
Frame = -2
Query: 882 YIAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRERSRXXXXXXAVMDMDEE--DPVP 709
++AK T GFSGADLTEICQRACKLAIR++ E EI +E+ R M++E DPVP
Sbjct: 679 FLAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVP 738
Query: 708 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 571
EI+RAHFEEAMKFARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 739 EITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/90 (27%), Positives = 43/90 (47%)
Frame = -2
Query: 882 YIAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRERSRXXXXXXAVMDMDEEDPVPEI 703
YIA T GFS +DL +C+ A + IR EI R + + M + + + +I
Sbjct: 374 YIASNTSGFSNSDLVALCKEAAMVPIR-----EIDRSK----------LSMTDGEKIRKI 418
Query: 702 SRAHFEEAMKFARRSVSDNDIRKYEMFAQT 613
+ F+ A++ R S S + K F+++
Sbjct: 419 RASDFDTALRTIRPSTSQKIMSKLSDFSRS 448
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEI 781
+ + T G+SGA+L +C+ A A+R++ +A I
Sbjct: 656 LVEKTSGYSGAELVAVCRTAAMFAMRESIDATI 688
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQA 796
+A T GFSGAD++ +C A +A R A
Sbjct: 494 LAAHTPGFSGADISNVCNEAALIAARDA 521
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRE 772
+ K++ GFS ADL +C A AIR E I +
Sbjct: 340 VVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDED 375
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAIRQAXEAEIHRE 772
+ K++ GFS ADL +C A AIR E I +
Sbjct: 348 VVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDED 383
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAI 805
IAK+T G+ GADL + + A K+AI
Sbjct: 428 IAKLTPGYVGADLQALIREAAKVAI 452
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 732 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 628
++ ++ V + HF EA R SV++ D +KYE
Sbjct: 763 LENDESVKGVGMRHFREAASRIRPSVTEADRKKYE 797
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 879 IAKVTQGFSGADLTEICQRACKLAI 805
IAK+T G+ GADL + + A K+AI
Sbjct: 428 IAKLTPGYVGADLQALIREAAKVAI 452
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 732 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 628
++ ++ V + HF EA R SV++ D +KYE
Sbjct: 763 LENDESVKGVGMRHFREAASRIRPSVTEADRKKYE 797
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 28.3 bits (60), Expect = 7.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 104 VSSYCMLSGSCYTYCICARSSVTLPTSRCSV 12
+S +C+ G+ +T IC + + + ++ C+V
Sbjct: 443 ISGFCIEVGTAFTVLICVKFGIPISSTHCTV 473
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,805
Number of Sequences: 27780
Number of extensions: 370108
Number of successful extensions: 1106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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