Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H03
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    31   1.1  
01_07_0098 - 41071997-41072248,41072387-41072519,41072694-410728...    29   5.6  
02_01_0388 + 2812235-2815003                                           28   7.4  
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208...    28   9.8  
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812...    28   9.8  

>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 728 SIDRLRRAHKSFRKCIL 678
           +IDRLRRAHK + KC+L
Sbjct: 714 TIDRLRRAHKPYLKCLL 730


>01_07_0098 -
           41071997-41072248,41072387-41072519,41072694-41072886,
           41072975-41073049,41073140-41073266,41073613-41073833,
           41073957-41074110
          Length = 384

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +1

Query: 604 LFKKVPSGSTAHNHYANDGDKYYFCKIHFRNDLWALRSLSIESSAGRIHLNSL 762
           +F+ +P+GS   + YAN G K    ++ F+  L    S++I ++ G  HL+SL
Sbjct: 153 VFEYLPNGSVCGHLYANTG-KESMTRLEFKQRL----SIAIGAAKGLNHLHSL 200


>02_01_0388 + 2812235-2815003
          Length = 922

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 171 VSFVLCRSTLLTELTKCHRVTNTSPYFFKIPD 266
           V  + CR+ L+T L +C R+ +    F +IP+
Sbjct: 319 VKSIACRTALITGLAQCGRIDDARILFEQIPE 350


>06_03_0539 +
           21919115-21919313,21919474-21919582,21920595-21920819,
           21921140-21921239,21921782-21921865,21922000-21922058,
           21922578-21922770
          Length = 322

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 366 LSRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 271
           L R DKN   I  I  +TY  E   K I  W+
Sbjct: 263 LKRMDKNITSIRPIFEKTYGKESATKWIAYWR 294


>05_05_0387 +
           24577448-24577638,24580375-24580767,24581078-24581208,
           24581460-24581899
          Length = 384

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 559 SADDRIANSLTHTFKLFKKVPSGSTAHNHYANDG 660
           +++D +A+ L   FKL  K+ S  +A  H+ N+G
Sbjct: 279 TSEDEVADWLIERFKLKNKLLSDFSALGHFPNEG 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,263,532
Number of Sequences: 37544
Number of extensions: 321610
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)