Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_H02
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 595 KGSXRAFPPNHPL 557
           K S   +PPNHPL
Sbjct: 67  KSSTSPYPPNHPL 79


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  IRNKFFHRCLFQLICCCTLQILHK 83
           +RN +FH  L   +   +LQ+LH+
Sbjct: 327 LRNNYFHMDLENNVQSYSLQLLHQ 350


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +3

Query: 174 LIITLGK*VHPFITAIGLNLTVFLLIPAA*HVSTTSVTFLYDSGASSI 317
           +++ L + +  FIT +G     + L+P    ++T   T + D    S+
Sbjct: 67  VLLALAEQLGSFITLVGGPEYAYCLLPPLESLATVEETVVRDKAVESL 114


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 451 FGSTCHGAGRALSRAKS 401
           FGSTC G+  +++  KS
Sbjct: 20  FGSTCGGSSSSMAYLKS 36


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 515  WWYNGNLQLCTNWYSSRNDRNVW 447
            W+Y+G L      Y +RN+   W
Sbjct: 1174 WFYDGPLIRGEVHYLNRNEETFW 1196


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 515  WWYNGNLQLCTNWYSSRNDRNVW 447
            W+Y+G L      Y +RN+   W
Sbjct: 1174 WFYDGPLIRGEVHYLNRNEETFW 1196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,308
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)