Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_H02
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81505-2|CAB04121.2| 505|Caenorhabditis elegans Hypothetical pr... 232 2e-61
Z69360-5|CAE45744.1| 454|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z69788-2|CAA93645.1| 303|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 29 3.5
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 29 3.5
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 27 8.1
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 8.1
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z81505-2|CAB04121.2| 505|Caenorhabditis elegans Hypothetical
protein F16A11.2 protein.
Length = 505
Score = 232 bits (567), Expect = 2e-61
Identities = 109/136 (80%), Positives = 120/136 (88%)
Frame = -2
Query: 610 LLVHRKGSXRAFPPNHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGMTETFGSTCHG 431
L VHRKG+ RAFP +HPLIPVDYQL GQPVLIGG+MGTCSYVLTGT QG+ ETFG+TCHG
Sbjct: 370 LCVHRKGATRAFPAHHPLIPVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLVETFGTTCHG 429
Query: 430 AGRALSRAKSRRNIDYKEVLNKLETMGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAG 251
AGRALSRAKSRR I + V++ L+ ISIR+ASPKL+MEEAPESYKNVTDVVDTC AAG
Sbjct: 430 AGRALSRAKSRRTITWDSVIDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCDAAG 489
Query: 250 ISKKTVKLRPIAVIKG 203
ISKK VKLRPIAVIKG
Sbjct: 490 ISKKAVKLRPIAVIKG 505
>Z69360-5|CAE45744.1| 454|Caenorhabditis elegans Hypothetical
protein F25H8.5d protein.
Length = 454
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = -2
Query: 478 GTHQGMTETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMGISIRVASPKLVMEEAPE 299
G H+GM + HGAG+ AK+ N ++ T G +I V K V + A +
Sbjct: 150 GAHEGMRMVGENVAHGAGKVADGAKAAGNY----AVDSANTAGEAI-VDGAKTVGQTASD 204
Query: 298 SYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG 203
+ + + + H AG+ + K ++G
Sbjct: 205 GMRMIGE--NVAHGAGVVVEGAKSAGEQTVEG 234
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = -2
Query: 478 GTHQGMTETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMGISIRVASPKLVMEEAPE 299
G H+GM + HGAG+ AK+ N ++ T G +I V K V + A +
Sbjct: 476 GAHEGMRMVGENVAHGAGKVADGAKAAGNY----AVDSANTAGEAI-VDGAKTVGQTASD 530
Query: 298 SYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG 203
+ + + + H AG+ + K ++G
Sbjct: 531 GMRMIGE--NVAHGAGVVVEGAKSAGEQTVEG 560
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = -2
Query: 478 GTHQGMTETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMGISIRVASPKLVMEEAPE 299
G H+GM + HGAG+ AK+ N ++ T G +I V K V + A +
Sbjct: 476 GAHEGMRMVGENVAHGAGKVADGAKAAGNY----AVDSANTAGEAI-VDGAKTVGQTASD 530
Query: 298 SYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG 203
+ + + + H AG+ + K ++G
Sbjct: 531 GMRMIGE--NVAHGAGVVVEGAKSAGEQTVEG 560
>Z69788-2|CAA93645.1| 303|Caenorhabditis elegans Hypothetical
protein F09A5.3 protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 21 KFFHRCLFQLICCCTLQILHKFLGNPLHIII 113
+F + C + CC ++LH FL +PL II
Sbjct: 122 QFIYNCTMSVFRCCRNRMLHHFLIDPLGRII 152
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = -2
Query: 523 VLIGGTMGTCSYVLT-GTHQG-MTETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMG 350
V+ G + +L+ G H ++E+F S A + L S ++ +LNK+ T
Sbjct: 110 VMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTS 169
Query: 349 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKTVKL 227
++ +V S + AP + V ++++ + + ++ K +K+
Sbjct: 170 LNSKVVSQHSWL-LAPMAVNAVKKIINSENDSNVNLKMIKI 209
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = -2
Query: 523 VLIGGTMGTCSYVLT-GTHQG-MTETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLETMG 350
V+ G + +L+ G H ++E+F S A + L S ++ +LNK+ T
Sbjct: 110 VMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTS 169
Query: 349 ISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKTVKL 227
++ +V S + AP + V ++++ + + ++ K +K+
Sbjct: 170 LNSKVVSQHSWL-LAPMAVNAVKKIINSENDSNVNLKMIKI 209
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 397 RNIDYKEVLNKLETMGISIRVASPKLVMEE 308
R IDY+EVLN E +G + + + K +E
Sbjct: 744 RQIDYQEVLNSQELLGDELEMFAKKETQKE 773
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 397 RNIDYKEVLNKLETMGISIRVASPKLVMEE 308
R IDY+EVLN E +G + + + K +E
Sbjct: 772 RQIDYQEVLNSQELLGDELEMFAKKETQKE 801
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 397 RNIDYKEVLNKLETMGISIRVASPKLVMEE 308
R IDY+EVLN E +G + + + K +E
Sbjct: 744 RQIDYQEVLNSQELLGDELEMFAKKETQKE 773
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 225 LNLTVFLLIPAA*HVSTTSVTFLYDSGASS--ITSFGDATLMEIPIVSSL 368
LN T+ LL+P HVS +FL S S T F + P+ S+
Sbjct: 295 LNRTINLLLPIGDHVSAIEASFLSSSSKQSKFFTGFKSSETEVSPVDGSI 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,499
Number of Sequences: 27780
Number of extensions: 217866
Number of successful extensions: 648
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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