Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_G24
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 35 0.010
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 32 0.096
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 31 0.13
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.68
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.6
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 27 2.7
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 3.6
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 6.3
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 8.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.3
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 8.3
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 8.3
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 35.1 bits (77), Expect = 0.010
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Frame = -1
Query: 702 DKNHGAXVELNCXTDFVAKXDKFQXMIEDAAIASFKFA---HTKLQAKGPITXMELDSEQ 532
D E+NC +DFVA+ FQ + A + H+ + + L +
Sbjct: 102 DGRKAVMAEINCESDFVAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKNEILKHQA 161
Query: 531 LGTLHAEGGKK-------LSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 373
+ + E +K L E + GE ++R C A I ++H A
Sbjct: 162 YVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQ 221
Query: 372 XXXXXXSGKYGALLAYKQP-NDVEDIGRQLCQHIVGCAPTKIGD 244
G+ G+++ + + + Q+ + IV P+ +
Sbjct: 222 SSPLQQLGRIGSMVQINSDLSTRKGLSNQIAKEIVAQDPSSTSE 265
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 31.9 bits (69), Expect = 0.096
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 255 KIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEII 121
K+GD + ++ + D++ C + ++ P Y I+E+L H VE+I
Sbjct: 279 KLGDIKINEEVQQKDEQECP--GDKVIPPEYAIQEVLWSHVVEVI 321
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = -1
Query: 309 VEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNV 130
++D+ ++C H A T +D+ TCL ++YL +Y ++ L+ N
Sbjct: 366 LQDVLNEVC-HETMLADTDAETSNNSIMIMCADERTCLQLRDYLSTVTYDNKDSLKNMNS 424
Query: 129 EIIDYVRF 106
+++DY ++
Sbjct: 425 KLVDYFQW 432
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -2
Query: 401 SQVIPIQRLAVLVIIPLENMGPCSLTNSQTT*KTSAGNYASTSSAVHPQKSVTKKKTNQL 222
S+++P + + +++ LEN+ LT+S + GNY + Q K+N
Sbjct: 468 SKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHW 527
Query: 221 RTQMMKH 201
Q++ +
Sbjct: 528 EAQIVSY 534
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 290 NYASTSSAVHPQKSVTKKKTNQLRTQMMKHVLFSRNTCS 174
N +S +S + +KS+ KK NQ TQ+ FS N S
Sbjct: 211 NLSSKASVLRNKKSILLKKRNQDETQLTTEEDFSANNDS 249
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 297 GRQLCQH-IVGCAPTKIG--DKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVE 127
GR+L + +G A ++ D++ D L+FQ+ + EEIL+K N+E
Sbjct: 583 GRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIE 642
Query: 126 IIDYVR 109
+ D R
Sbjct: 643 VGDLKR 648
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.7
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -2
Query: 326 TNSQTT*KTSAGNYASTSSAVHPQKSVTKKKTNQLRTQMMKHVLFSRNTCSIHPIRLRKS 147
T S+ K ++ +TSS TK KTNQL + + + S R S
Sbjct: 340 TKSEELKKINSIKVDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNS 399
Query: 146 YRNTMLKSLIM--LDSLA-EKYLNL 81
N K L M +D L+ E+Y NL
Sbjct: 400 LPNNTTKELEMKKMDDLSHERYENL 424
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 127 FNIVFL*DFLNRIGWIEQVFLENKTCFII*VLSWFVFFFVTDFCGC 264
F +V DF+ R+ W+ +V E+++ F F+ F+ F C
Sbjct: 296 FAVVSAIDFVLRMAWVVRVLPEHQSAFFTTDFGIFIMQFLEVFRRC 341
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 320 SQTT*KTSAGNYASTSSAVHPQKSVTKKKTNQLRTQMMKHVLFSRNTCS 174
SQ T +++S + A+ P +T + +M+K V+F R C+
Sbjct: 567 SQLLQATPGRSFSSNAEALLPLNYITLLSKDSSSPKMLKDVIFERLQCA 615
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 236 KTNQLRTQMMKHVLFSRNTCSIHPIRLRKSYRNTMLKSLIML-DSLAEK 93
KT LR + I PI L +SY N++LKSL L D L +K
Sbjct: 289 KTFPLRNKTTSDDYLFLPETDIPPIILSRSYVNSVLKSLPALPDELFQK 337
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 347 NMGPCSLTNSQTT*KTSAGNYASTSSAV 264
N+G CSL T S +YA TSS++
Sbjct: 427 NIGRCSLKKLSTIRSCSTNSYAFTSSSL 454
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 8.3
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = -2
Query: 383 QRLAVLVIIPLENMGPC--SLTNSQTT*KTS--AGNYASTSSAVHP--QKSVTKKKTNQL 222
+R+ LV+IP EN+GP ++ N +T T G + + + P Q S+ + +
Sbjct: 96 ERIRSLVVIPSENLGPLHEAIVNLHSTYMTLYWLGEFFGIQAKLFPLFQGSINENEKLSR 155
Query: 221 RTQMMKHVLFSRNTCSIHPIRLRKSYRNTMLK 126
Q + S S P+ R+S + +LK
Sbjct: 156 YYQASLLLQESDQLLSRFPLMKRQSSVSLLLK 187
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 699 KNHGAXVELNCXTDFVAKXDKFQXMIEDAA 610
K +G V++N DF+ K + I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,023
Number of Sequences: 5004
Number of extensions: 64273
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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