Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_G24
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical pr... 106 1e-23
D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation fact... 106 1e-23
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 31 1.1
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical... 29 3.4
AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine r... 29 3.4
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical
protein F55C5.5 protein.
Length = 316
Score = 106 bits (255), Expect = 1e-23
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 24/233 (10%)
Frame = -1
Query: 723 GLVAVKFDKNHGAXVELNCXTDFVAKXDKFQXMIEDAAIASFKFAHTKLQAKGPITXMEL 544
GLV+V D + A VEL+C TDFVA+ F+ ++ + I++ A K Q+ + ++
Sbjct: 86 GLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSKLQE 143
Query: 543 DSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXX 364
+ LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 144 FTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KDGTD 201
Query: 363 XXXSGKYGALLAYKQ--PNDV--EDIGRQLCQHIVGCAPTKIGD-----------KEKDK 229
G++ +L+A Q P + + + Q+CQHI+G +P +G+ + ++
Sbjct: 202 DIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGEAAESVKTQEGLRSQEG 261
Query: 228 PAKNSD---------DETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCG 97
N+D ET L+ Q ++L+PS ++ E L+ HN I+D+VR G
Sbjct: 262 HDPNADPVVVTNIDESETALLRQAFMLNPSQSVHEYLKSHNANILDFVRVELG 314
>D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation factor
Ts homologue protein.
Length = 316
Score = 106 bits (255), Expect = 1e-23
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 24/233 (10%)
Frame = -1
Query: 723 GLVAVKFDKNHGAXVELNCXTDFVAKXDKFQXMIEDAAIASFKFAHTKLQAKGPITXMEL 544
GLV+V D + A VEL+C TDFVA+ F+ ++ + I++ A K Q+ + ++
Sbjct: 86 GLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSKLQE 143
Query: 543 DSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXX 364
+ LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 144 FTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KDGTD 201
Query: 363 XXXSGKYGALLAYKQ--PNDV--EDIGRQLCQHIVGCAPTKIGD-----------KEKDK 229
G++ +L+A Q P + + + Q+CQHI+G +P +G+ + ++
Sbjct: 202 DIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGEAAESVKTQEGLRSQEG 261
Query: 228 PAKNSD---------DETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCG 97
N+D ET L+ Q ++L+PS ++ E L+ HN I+D+VR G
Sbjct: 262 HDPNADPVVVTNIDESETALLRQAFMLNPSQSVHEYLKSHNANILDFVRVELG 314
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = -2
Query: 440 VPSAGKRTARMSRSQVIPIQRLAVLVIIPLENMGPCSLTNSQTT*KTSAGNYASTSSAVH 261
VPS + S + + LA+ + P + T+S++ T+A A+ +A
Sbjct: 2732 VPSTPTPSTSASAANA-QLMALALAQQVQQAQQTPSTPTSSKSRSATAAAQAAAAQAAAS 2790
Query: 260 PQKSVTKKKTNQLRTQMM 207
Q ++TK++ L+ QMM
Sbjct: 2791 QQDAITKQQLEMLQMQMM 2808
>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
protein Y53F4B.21 protein.
Length = 1099
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = -2
Query: 242 KKKTNQLRTQMMKHVLFSRNTCSIHPIRLRKSYRNTMLKSLIMLDSLAEKYLNLVCQESK 63
KK + L + + +R C I+ ++ +YR ++K + + Y ++C E K
Sbjct: 948 KKYMDDLESNTRSLIFTNRPDCPINSTKMHAAYRLGLVKEMFERVAEHRNYTKMMCVEFK 1007
Query: 62 SNL 54
S L
Sbjct: 1008 SLL 1010
>AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine
receptor, class w protein91 protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 176 SKYSWKIRHVSSSEFLAGLSFSLSPIFVGAQPTMCWHSC 292
SKY+ ++R+ S F+ G S +F+ + + C++ C
Sbjct: 140 SKYASEVRYQKMSMFIFGFKSSAFSVFISSLMSSCFYLC 178
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -2
Query: 434 SAGKRTARMSRSQVIPIQRLAVLVIIPLENMGPCSLTNSQTT*KTSAGNYASTSSAVHPQ 255
S+G T+R + S + ++ + ++ + G S T S TT KTS + ++TS A P
Sbjct: 486 SSGSNTSRKTISDLQMRKQQYRMRLLASQAAG--STTRSTTTLKTSTTSVSTTSEATSPS 543
Query: 254 KS 249
K+
Sbjct: 544 KT 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,144
Number of Sequences: 27780
Number of extensions: 369356
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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