Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G19
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   4.3  

>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -2

Query: 292 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 113
           VKR+E+TL  +K F    +  +W L + L  L + L + +  +F         +   + E
Sbjct: 294 VKREEVTLEGIKQFFVLVEKEDWKL-DTLCDLYETLTITQAVIFANTRRKVDWLAAKMTE 352

Query: 112 EDW---ELHGQLNYELKENDKIM 53
           +D     +HG ++   KE D IM
Sbjct: 353 KDHTVSSMHGDMSQ--KERDIIM 373


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +1

Query: 61  YHFL*VHNLTVRGAPSLLH*STRVYQVGQ--NHPSRTTLLFPPAGCPLTKSTALLTSNSD 234
           YHF   H+L +R  PS        Y  GQ    P R            T ST+   S S 
Sbjct: 98  YHFKVAHHLDMRREPSRYRMMLARYFTGQISRPPPRPASTSLTTSAAFTSSTSSAASTSL 157

Query: 235 FENPVKRSSMTA 270
             +PV  SS ++
Sbjct: 158 TTSPVSTSSTSS 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,207,959
Number of Sequences: 59808
Number of extensions: 322463
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)