Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G18
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   7.4  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   9.7  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 129 VISSQNTILTCDGVDSNXSIACRQ 200
           VIS++N I+T  G+DS+    C Q
Sbjct: 388 VISAENKIVTYGGMDSHVHFICPQ 411


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -1

Query: 479 VYCITLKSV--YVGIGSKFCELIITCNAAWGLTCFCGKE*RGRIRLV*VLFFDTHTTATY 306
           V C T  ++  ++ +   + +  + C     +   C +  +   R+      DTHT++T 
Sbjct: 105 VLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164

Query: 305 LLLWIY 288
            L+W Y
Sbjct: 165 PLIWRY 170


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 335 FFDTHTTATYLLLWIYNNSFYYIVITPAFH 246
           F +T   +TYLL WI     Y    TP  H
Sbjct: 196 FAETCRMSTYLLAWIVAELEYVEYFTPGKH 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,136
Number of Sequences: 5004
Number of extensions: 48980
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)