Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G17
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    28   1.5  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.4  

>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 DKKQKSQNEELKKRIQTWD 229
           D+KQK Q E L+  I+ WD
Sbjct: 69  DEKQKQQRERLRSMIKVWD 87


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 227 PKFVFFFSILHFEIFVFY--HNVNCSFCKTD*NVCACF-KNCVVLKFEAFDVL 78
           P   F+F IL   I   Y     N +F  T   + + F K+CV LKF  FD++
Sbjct: 615 PYSQFYFCILSSAIIKMYLDFEFNENFNATTFGLLSSFTKHCVWLKFRNFDLV 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,556
Number of Sequences: 5004
Number of extensions: 44475
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)