Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G17
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    27   9.8  
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    27   9.8  

>U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical
           protein T25G12.2 protein.
          Length = 537

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 215 FFFSILHFEIFVFYHNVNCSFCKTD*NVCACFKNC 111
           FFF I++F+I  F+   NC F     ++    KNC
Sbjct: 10  FFFEIVNFQIEFFFSKKNCFFRTMSGSLQEVLKNC 44


>Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical
           protein F28C6.9 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 275 RPNLTDSKHFNITILNPKFVFFFSILHF 192
           +P +  SKHF +  ++ K +  F+ILHF
Sbjct: 37  KPGVFSSKHFKMYKMHLKCITCFNILHF 64


>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 361 AFLLSSLTCV*FLGFFFVYVTIFST 287
           A  +S LTCV F  F FVY+ + +T
Sbjct: 72  AISISQLTCVLFFIFDFVYIRLMTT 96


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 227 PKFVFFFSILHFEI 186
           PK +FFFS LHF+I
Sbjct: 495 PKILFFFSYLHFQI 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,499,329
Number of Sequences: 27780
Number of extensions: 247731
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)