Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G17
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.6  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 154  FVKQTEMYVPVSKTVLYLNLKHLMFCIL-GVSAYSGKSDFMYNE 26
            F+    + VPV   +L + +  ++ C+L G    S K D +Y +
Sbjct: 1581 FMANLNLVVPVVAAILVIIVAVIVICVLRGKGHGSDKDDVVYQQ 1624


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 149 YKSYNLHYDKKQKSQNEELKKR 214
           YKSY  + DK+ K  N E+  R
Sbjct: 454 YKSYPNYIDKETKDMNLEISTR 475


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 370 YILAFLLSSLTCV 332
           YIL F+L ++TCV
Sbjct: 4   YILLFVLVTITCV 16


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 370 YILAFLLSSLTCV 332
           YIL F+L ++TCV
Sbjct: 4   YILLFVLVTITCV 16


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 635 VFYPQSRYVYQVLHETYYKVRXTRV 561
           VFY  SRYV++   E Y  +  T +
Sbjct: 345 VFYIISRYVFRSALEDYCNIVATHL 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,497
Number of Sequences: 438
Number of extensions: 2991
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)