Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G14
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.4  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 159 LMIFNFLITVHLSQKICFKHTKI*LHIINTLKYHKV 266
           L I +F   + + Q IC   T I   IIN +   K+
Sbjct: 17  LSIKDFQNAIRMGQSICMAKTGINKQIINDVNDGKI 52


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 ISTTSYDFQFFNHSSFITENL 208
           I+TTS +F   +HS  IT ++
Sbjct: 110 IATTSNEFIRIHHSGSITRSI 130


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 ISTTSYDFQFFNHSSFITENL 208
           I+TTS +F   +HS  IT ++
Sbjct: 110 IATTSNEFIRIHHSGSITRSI 130


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 ISTTSYDFQFFNHSSFITENL 208
           I+TTS +F   +HS  IT ++
Sbjct: 49  IATTSNEFIRIHHSGSITRSI 69


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 406 GHRIKALTVSANEGFVRAALQQGVTY 329
           G+   ALT    +GF R ++ +   Y
Sbjct: 196 GYHYNALTCEGCKGFFRRSITKNAVY 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,956
Number of Sequences: 438
Number of extensions: 2547
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)