Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G06
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58764-4|AAB00726.2|  216|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58753-3|AAC24436.1|  118|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF016667-1|AAB66088.2|  162|Caenorhabditis elegans Hypothetical ...    27   6.5  
U23516-3|AAG38881.1|  218|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine re...    27   8.6  

>AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical
           protein F45C12.8 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 294 KINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEAR-ITDDTVKLD 118
           + NE+F+     Q+       + F ++ E+  R + I    +K  +  +R +T  +V+ D
Sbjct: 157 RCNEDFKLMMENQSVQLDSFQLDFDDNCEQGFRDKCIDG--VKKALKSSRRVTSKSVETD 214

Query: 117 NIPFNDHAIL 88
           ++PF D A L
Sbjct: 215 SVPFPDIARL 224


>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/56 (19%), Positives = 33/56 (58%)
 Frame = +2

Query: 335 TFILVLCNFLKLCKTKRLVIIFSLVFTKPLV*YLLFS*IFFIVCLHNVFFFFFYLV 502
           +FI ++ +F K+  +   ++ +  + ++  + +L+F   F ++C+    +F+FY++
Sbjct: 311 SFIRMIKSFWKMNFSLLRLLFYFAIKSRWSIVFLIFFIAFPLICIFITLYFYFYVM 366


>U58764-4|AAB00726.2|  216|Caenorhabditis elegans Hypothetical
           protein M03E7.5 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = -1

Query: 417 LVKTKLKMMTRRLVLQSFKKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIK 238
           L+K  L+ MT R         H  R K  E +++ALL  R   N+E R N     E ++ 
Sbjct: 80  LIKNSLRTMTNR---------HTNRKKQAE-EKKALLKQRFTTNQETRVNLEFDEELNLN 129

Query: 237 AMIAFGEDIERELRTQ 190
             + + +++  ++  Q
Sbjct: 130 DKLKYSDNMIDQMLAQ 145


>U58753-3|AAC24436.1|  118|Caenorhabditis elegans Hypothetical
           protein W03B1.1 protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 312 LLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQV 187
           L A  I  N+E  K K    E +IKA+     + E+++RTQ+
Sbjct: 31  LKAYEIVANQERDKTKYESLEPAIKALFTLDSEHEKKVRTQL 72


>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 323 SPSKTFILVLCNFLKLCKTKRLVIIFS 403
           +PS   +L+L  FLK  KTK++++ FS
Sbjct: 296 APSDKRLLLLFTFLKKNKTKKVMVFFS 322


>AF016667-1|AAB66088.2|  162|Caenorhabditis elegans Hypothetical
           protein T20H12.1 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 226 CNHRFNRVFILNIFVFAKFF 285
           C + FNRVF L I  F KFF
Sbjct: 57  CCYLFNRVFFLEISPFFKFF 76


>U23516-3|AAG38881.1|  218|Caenorhabditis elegans Hypothetical
           protein B0416.4 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 372 QSFKKLHRTRMKVFEGDERALLAARIKINEEF 277
           ++FK++ R RMKV + DE+ L     K N EF
Sbjct: 118 ETFKQMVRDRMKVKDVDEKLLQQYMKKENVEF 149


>AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein12 protein.
          Length = 291

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 224 NAIIALIEFSF*TFLFLRNSSFIFIRAANKARSSPSKTFILVLCNFLKLCKTKRLVI 394
           N I+ + +FSF     + NS FI +    +   S S     V C F  LC    +++
Sbjct: 8   NIIVTVYKFSFFVIGIVGNSLFIHLIFKKQKLRSRSTLLQCVQCAFQNLCLVGTILV 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,081,589
Number of Sequences: 27780
Number of extensions: 181774
Number of successful extensions: 511
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)