Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G05
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   194   5e-50
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   192   2e-49
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388...    28   4.2  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    27   7.3  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    27   7.3  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  194 bits (472), Expect = 5e-50
 Identities = 99/152 (65%), Positives = 112/152 (73%), Gaps = 21/152 (13%)
 Frame = -3

Query: 471 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRA---- 304
           KKR FRK++YRGVDLD LLDM  + L++L          RGLKRKPMAL+KKLR+A    
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311

Query: 303 -----------------KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVE 175
                            KK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVE
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVE 371

Query: 174 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHS 79
           IKPEMIGHYL EFS++YKPVKHGRPGIGATHS
Sbjct: 372 IKPEMIGHYLAEFSISYKPVKHGRPGIGATHS 403


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  192 bits (468), Expect = 2e-49
 Identities = 89/121 (73%), Positives = 102/121 (84%)
 Frame = -3

Query: 471 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 292
           KKR FRK++YRGVDLD LLDM  + L++L          RGLKRKPMAL+KKLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183

Query: 291 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 112
           P  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVK
Sbjct: 184 PAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 243

Query: 111 H 109
           H
Sbjct: 244 H 244


>02_04_0624 +
           24538095-24538183,24538429-24538612,24538725-24538886,
           24538988-24539225,24539301-24539370,24539439-24539530,
           24539799-24539836,24540018-24540039,24540462-24540618,
           24540702-24540753,24542144-24542207,24542279-24542362,
           24543418-24543543,24543622-24543818,24543903-24544091,
           24544186-24544434,24544507-24544556,24544977-24545059,
           24545164-24545449,24545751-24545794,24545878-24546626
          Length = 1074

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 43  F*TLYLSGMNLVAVCSTDTGSTVLYRLVRD*ELSEVMADHLRLDFNLVK 189
           F   +LS +N+V    T +G TVL+ L     LS  ++   R  FNL+K
Sbjct: 40  FPACFLSDVNMVISAPTGSGKTVLFELCILRLLSRFLSSEWR--FNLIK 86


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 235 NDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT 342
           +DD+V+ VSL+ L  L    ++L    L  +CH+FT
Sbjct: 655 DDDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFT 690


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 437 ELISISSLICPM-SNSWN*CMPVRAGGSLVVLNVNQWHWS 321
           E+I I  L+C + S  WN  + + A  ++ +  VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,378
Number of Sequences: 37544
Number of extensions: 258476
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)