Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G05
         (542 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB...   250   7e-67
AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p pro...   249   2e-66
AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA...   249   2e-66
AY058318-1|AAL13547.1|  872|Drosophila melanogaster GH08353p pro...    31   1.3  
AE014296-3271|AAF49077.2|  872|Drosophila melanogaster CG14183-P...    31   1.3  
DQ316000-1|ABC48747.1|  442|Drosophila melanogaster bag of marbl...    28   9.5  
AY119656-1|AAM50310.1|  460|Drosophila melanogaster SD02418p pro...    28   9.5  
AJ010073-1|CAB45234.1|  614|Drosophila melanogaster XRCC1 protei...    28   9.5  
AF132142-1|AAD33589.1|  614|Drosophila melanogaster DNA repair p...    28   9.5  
AE014298-727|AAF46025.1|  614|Drosophila melanogaster CG4208-PA ...    28   9.5  
AE014296-1211|AAF50597.1|  460|Drosophila melanogaster CG8616-PA...    28   9.5  

>AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB,
           isoform B protein.
          Length = 147

 Score =  250 bits (613), Expect = 7e-67
 Identities = 115/140 (82%), Positives = 125/140 (89%)
 Frame = -3

Query: 498 MAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVK 319
           M +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH        RGLKRKPMAL+K
Sbjct: 1   MQQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIK 60

Query: 318 KLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGE 139
           KLR+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGE
Sbjct: 61  KLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGE 120

Query: 138 FSVTYKPVKHGRPGIGATHS 79
           F++TYKPVKHGRPGIGATHS
Sbjct: 121 FALTYKPVKHGRPGIGATHS 140


>AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p
           protein.
          Length = 148

 Score =  249 bits (609), Expect = 2e-66
 Identities = 114/138 (82%), Positives = 124/138 (89%)
 Frame = -3

Query: 492 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKL 313
           +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH        RGLKRKPMAL+KKL
Sbjct: 4   QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63

Query: 312 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 133
           R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64  RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123

Query: 132 VTYKPVKHGRPGIGATHS 79
           +TYKPVKHGRPGIGATHS
Sbjct: 124 LTYKPVKHGRPGIGATHS 141


>AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA,
           isoform A protein.
          Length = 148

 Score =  249 bits (609), Expect = 2e-66
 Identities = 114/138 (82%), Positives = 124/138 (89%)
 Frame = -3

Query: 492 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKL 313
           +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH        RGLKRKPMAL+KKL
Sbjct: 4   QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63

Query: 312 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 133
           R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64  RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123

Query: 132 VTYKPVKHGRPGIGATHS 79
           +TYKPVKHGRPGIGATHS
Sbjct: 124 LTYKPVKHGRPGIGATHS 141


>AY058318-1|AAL13547.1|  872|Drosophila melanogaster GH08353p
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 327 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 199
           L+KK  R KK  PP EK    K +    ++  E+V  +  IY+
Sbjct: 20  LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62


>AE014296-3271|AAF49077.2|  872|Drosophila melanogaster CG14183-PA
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 327 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 199
           L+KK  R KK  PP EK    K +    ++  E+V  +  IY+
Sbjct: 20  LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62


>DQ316000-1|ABC48747.1|  442|Drosophila melanogaster bag of marbles
           protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -3

Query: 204 YNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSYKVHSAQVERL 46
           Y+ + +++ +   +    YL  F +  KP    R G   +++ K H+ ++ERL
Sbjct: 243 YDFEKYDECDKLLKGFASYLDNFKLLLKPKMRNRNGNSGSNADKFHTQRMERL 295


>AY119656-1|AAM50310.1|  460|Drosophila melanogaster SD02418p
           protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 229 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 372
           L  ++H+ +Q+  H  WLL+  S FL          W   +++  PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249


>AJ010073-1|CAB45234.1|  614|Drosophila melanogaster XRCC1 protein
           protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 322 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 227
           +E   ++ER  S+ E + R     KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379


>AF132142-1|AAD33589.1|  614|Drosophila melanogaster DNA repair
           protein XRCC1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 322 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 227
           +E   ++ER  S+ E + R     KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379


>AE014298-727|AAF46025.1|  614|Drosophila melanogaster CG4208-PA
           protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 322 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 227
           +E   ++ER  S+ E + R     KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379


>AE014296-1211|AAF50597.1|  460|Drosophila melanogaster CG8616-PA
           protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 229 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 372
           L  ++H+ +Q+  H  WLL+  S FL          W   +++  PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,186,612
Number of Sequences: 53049
Number of extensions: 432379
Number of successful extensions: 1311
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)